Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00100 and PGA1_65p00110 are separated by 269 nucleotides PGA1_65p00110 and PGA1_65p00120 are separated by 8 nucleotides PGA1_65p00120 and PGA1_65p00130 are separated by 8 nucleotides
PGA1_65p00100: PGA1_65p00100 - Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases, at 15,434 to 15,985
_65p00100
PGA1_65p00110: PGA1_65p00110 - putative amino-acid ABC transporter, periplasmic solute-binding protein, at 16,255 to 17,031
_65p00110
PGA1_65p00120: PGA1_65p00120 - putative amino-acid ABC transporter, permease protein, at 17,040 to 17,714
_65p00120
PGA1_65p00130: PGA1_65p00130 - putative amino-acid ABC transporter, ATP-binding protein, at 17,723 to 18,478
_65p00130
Position (kb)
16
17
18 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 15.646 kb on + strand, within PGA1_65p00100 at 16.186 kb on - strand at 16.197 kb on - strand at 16.230 kb on - strand at 16.511 kb on - strand, within PGA1_65p00110 at 16.740 kb on + strand, within PGA1_65p00110 at 16.770 kb on - strand, within PGA1_65p00110 at 16.775 kb on - strand, within PGA1_65p00110 at 16.881 kb on + strand, within PGA1_65p00110 at 16.912 kb on - strand, within PGA1_65p00110 at 16.931 kb on - strand, within PGA1_65p00110 at 17.274 kb on - strand, within PGA1_65p00120 at 17.436 kb on - strand, within PGA1_65p00120 at 17.519 kb on + strand, within PGA1_65p00120 at 17.657 kb on + strand at 17.713 kb on - strand at 17.738 kb on - strand at 17.851 kb on + strand, within PGA1_65p00130 at 17.978 kb on - strand, within PGA1_65p00130
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 15,646 + PGA1_65p00100 0.38 +0.4 16,186 - -0.1 16,197 - +0.4 16,230 - -0.1 16,511 - PGA1_65p00110 0.33 -0.1 16,740 + PGA1_65p00110 0.62 +0.5 16,770 - PGA1_65p00110 0.66 +1.4 16,775 - PGA1_65p00110 0.67 +0.9 16,881 + PGA1_65p00110 0.81 -1.7 16,912 - PGA1_65p00110 0.85 +2.7 16,931 - PGA1_65p00110 0.87 +0.9 17,274 - PGA1_65p00120 0.35 -1.7 17,436 - PGA1_65p00120 0.59 +0.5 17,519 + PGA1_65p00120 0.71 -2.1 17,657 + -1.7 17,713 - +0.9 17,738 - +1.2 17,851 + PGA1_65p00130 0.17 +2.5 17,978 - PGA1_65p00130 0.34 -0.1
Or see this region's nucleotide sequence