Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01270

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01260 and PGA1_262p01270 are separated by 37 nucleotidesPGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotidesPGA1_262p01280 and PGA1_262p01290 are separated by 97 nucleotides PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465 _262p01260 PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261 _262p01270 PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872 _262p01280 PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977 _262p01290 Position (kb) 138 139 140Strain fitness (log2 ratio) -2 -1 0 1 2at 137.830 kb on + strand, within PGA1_262p01260at 137.979 kb on + strand, within PGA1_262p01260at 137.987 kb on - strand, within PGA1_262p01260at 138.061 kb on - strand, within PGA1_262p01260at 138.344 kb on + strandat 138.383 kb on - strandat 138.827 kb on - strand, within PGA1_262p01270at 138.827 kb on - strand, within PGA1_262p01270at 138.850 kb on - strand, within PGA1_262p01270at 139.092 kb on - strand, within PGA1_262p01270at 139.151 kb on + strand, within PGA1_262p01270at 139.579 kb on + strand, within PGA1_262p01280at 139.734 kb on - strand, within PGA1_262p01280at 139.734 kb on - strand, within PGA1_262p01280at 139.734 kb on - strand, within PGA1_262p01280at 139.770 kb on - strand, within PGA1_262p01280at 140.074 kb on - strand, within PGA1_262p01290at 140.079 kb on - strand, within PGA1_262p01290at 140.152 kb on + strand, within PGA1_262p01290at 140.215 kb on - strand, within PGA1_262p01290at 140.215 kb on - strand, within PGA1_262p01290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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137,830 + PGA1_262p01260 0.48 -0.1
137,979 + PGA1_262p01260 0.60 -2.5
137,987 - PGA1_262p01260 0.61 +1.3
138,061 - PGA1_262p01260 0.67 -1.3
138,344 + +1.8
138,383 - -0.1
138,827 - PGA1_262p01270 0.43 -1.1
138,827 - PGA1_262p01270 0.43 +1.5
138,850 - PGA1_262p01270 0.46 -0.8
139,092 - PGA1_262p01270 0.78 -0.5
139,151 + PGA1_262p01270 0.85 -0.8
139,579 + PGA1_262p01280 0.52 -1.5
139,734 - PGA1_262p01280 0.77 -1.3
139,734 - PGA1_262p01280 0.77 -2.0
139,734 - PGA1_262p01280 0.77 +2.5
139,770 - PGA1_262p01280 0.83 +0.2
140,074 - PGA1_262p01290 0.10 -0.3
140,079 - PGA1_262p01290 0.11 +0.3
140,152 + PGA1_262p01290 0.18 -1.3
140,215 - PGA1_262p01290 0.24 +1.1
140,215 - PGA1_262p01290 0.24 +0.9

Or see this region's nucleotide sequence