Strain Fitness in Marinobacter adhaerens HP15 around HP15_3635

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3632 and HP15_3633 are separated by 8 nucleotidesHP15_3633 and HP15_3635 are separated by 66 nucleotidesHP15_3635 and HP15_3634 are separated by 14 nucleotidesHP15_3634 and HP15_3636 are separated by 18 nucleotides HP15_3632: HP15_3632 - multicopper oxidase-like protein, at 3,827,776 to 3,828,459 _3632 HP15_3633: HP15_3633 - protein-S-isoprenylcysteine methyltransferase, at 3,828,468 to 3,828,869 _3633 HP15_3635: HP15_3635 - conserved hypothetical protein, at 3,828,936 to 3,829,709 _3635 HP15_3634: HP15_3634 - hypothetical protein, at 3,829,724 to 3,829,846 _3634 HP15_3636: HP15_3636 - protein containing molybdopterin oxidoreductase / molybdopterin dinucleotide-binding region, at 3,829,865 to 3,831,976 _3636 Position (kb) 3828 3829 3830Strain fitness (log2 ratio) -2 -1 0 1 2at 3827.939 kb on + strand, within HP15_3632at 3827.947 kb on - strand, within HP15_3632at 3828.026 kb on - strand, within HP15_3632at 3828.128 kb on + strand, within HP15_3632at 3828.128 kb on + strand, within HP15_3632at 3828.128 kb on + strand, within HP15_3632at 3828.136 kb on - strand, within HP15_3632at 3828.136 kb on - strand, within HP15_3632at 3828.315 kb on + strand, within HP15_3632at 3828.315 kb on + strand, within HP15_3632at 3828.344 kb on + strand, within HP15_3632at 3828.424 kb on + strandat 3828.594 kb on - strand, within HP15_3633at 3828.662 kb on + strand, within HP15_3633at 3828.665 kb on - strand, within HP15_3633at 3828.719 kb on + strand, within HP15_3633at 3828.719 kb on + strand, within HP15_3633at 3828.720 kb on + strand, within HP15_3633at 3828.855 kb on + strandat 3828.858 kb on - strandat 3828.875 kb on - strandat 3828.971 kb on - strandat 3828.971 kb on - strandat 3829.186 kb on - strand, within HP15_3635at 3829.205 kb on + strand, within HP15_3635at 3829.253 kb on - strand, within HP15_3635at 3829.294 kb on + strand, within HP15_3635at 3829.294 kb on + strand, within HP15_3635at 3829.302 kb on - strand, within HP15_3635at 3829.302 kb on - strand, within HP15_3635at 3829.321 kb on + strand, within HP15_3635at 3829.329 kb on - strand, within HP15_3635at 3829.372 kb on + strand, within HP15_3635at 3829.415 kb on + strand, within HP15_3635at 3829.454 kb on + strand, within HP15_3635at 3829.492 kb on + strand, within HP15_3635at 3829.492 kb on - strand, within HP15_3635at 3829.545 kb on + strand, within HP15_3635at 3829.550 kb on + strand, within HP15_3635at 3829.563 kb on - strand, within HP15_3635at 3829.563 kb on - strand, within HP15_3635at 3829.565 kb on + strand, within HP15_3635at 3829.831 kb on - strand, within HP15_3634at 3829.833 kb on + strand, within HP15_3634at 3829.892 kb on - strandat 3829.966 kb on + strandat 3829.981 kb on - strandat 3829.988 kb on - strandat 3830.045 kb on + strandat 3830.088 kb on + strand, within HP15_3636at 3830.163 kb on + strand, within HP15_3636at 3830.178 kb on + strand, within HP15_3636at 3830.178 kb on + strand, within HP15_3636at 3830.178 kb on + strand, within HP15_3636at 3830.247 kb on - strand, within HP15_3636at 3830.271 kb on - strand, within HP15_3636at 3830.313 kb on + strand, within HP15_3636at 3830.443 kb on + strand, within HP15_3636at 3830.483 kb on - strand, within HP15_3636at 3830.528 kb on - strand, within HP15_3636at 3830.555 kb on + strand, within HP15_3636at 3830.566 kb on + strand, within HP15_3636at 3830.574 kb on + strand, within HP15_3636at 3830.574 kb on + strand, within HP15_3636at 3830.580 kb on - strand, within HP15_3636at 3830.599 kb on - strand, within HP15_3636at 3830.604 kb on + strand, within HP15_3636at 3830.612 kb on - strand, within HP15_3636at 3830.612 kb on - strand, within HP15_3636at 3830.642 kb on - strand, within HP15_3636

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,827,939 + HP15_3632 0.24 -1.2
3,827,947 - HP15_3632 0.25 +0.4
3,828,026 - HP15_3632 0.37 +0.6
3,828,128 + HP15_3632 0.51 +0.4
3,828,128 + HP15_3632 0.51 +1.1
3,828,128 + HP15_3632 0.51 -0.8
3,828,136 - HP15_3632 0.53 -0.1
3,828,136 - HP15_3632 0.53 +0.7
3,828,315 + HP15_3632 0.79 -2.7
3,828,315 + HP15_3632 0.79 +0.1
3,828,344 + HP15_3632 0.83 -1.3
3,828,424 + -0.2
3,828,594 - HP15_3633 0.31 -0.5
3,828,662 + HP15_3633 0.48 +0.2
3,828,665 - HP15_3633 0.49 -0.1
3,828,719 + HP15_3633 0.62 +0.3
3,828,719 + HP15_3633 0.62 +2.4
3,828,720 + HP15_3633 0.63 +1.9
3,828,855 + -0.1
3,828,858 - +0.5
3,828,875 - -0.2
3,828,971 - +0.0
3,828,971 - -0.9
3,829,186 - HP15_3635 0.32 +0.5
3,829,205 + HP15_3635 0.35 -0.0
3,829,253 - HP15_3635 0.41 -0.3
3,829,294 + HP15_3635 0.46 -0.0
3,829,294 + HP15_3635 0.46 -0.9
3,829,302 - HP15_3635 0.47 -0.5
3,829,302 - HP15_3635 0.47 -0.4
3,829,321 + HP15_3635 0.50 -0.2
3,829,329 - HP15_3635 0.51 -0.0
3,829,372 + HP15_3635 0.56 +0.1
3,829,415 + HP15_3635 0.62 +0.2
3,829,454 + HP15_3635 0.67 +0.2
3,829,492 + HP15_3635 0.72 -0.7
3,829,492 - HP15_3635 0.72 -0.7
3,829,545 + HP15_3635 0.79 -0.2
3,829,550 + HP15_3635 0.79 -0.3
3,829,563 - HP15_3635 0.81 -0.1
3,829,563 - HP15_3635 0.81 -1.1
3,829,565 + HP15_3635 0.81 -0.2
3,829,831 - HP15_3634 0.87 +0.4
3,829,833 + HP15_3634 0.89 -0.7
3,829,892 - -1.6
3,829,966 + -0.4
3,829,981 - -0.4
3,829,988 - -0.1
3,830,045 + -0.2
3,830,088 + HP15_3636 0.11 -0.2
3,830,163 + HP15_3636 0.14 -2.5
3,830,178 + HP15_3636 0.15 -1.2
3,830,178 + HP15_3636 0.15 -0.6
3,830,178 + HP15_3636 0.15 +0.1
3,830,247 - HP15_3636 0.18 -1.9
3,830,271 - HP15_3636 0.19 -1.0
3,830,313 + HP15_3636 0.21 +1.4
3,830,443 + HP15_3636 0.27 -0.3
3,830,483 - HP15_3636 0.29 +0.2
3,830,528 - HP15_3636 0.31 -0.0
3,830,555 + HP15_3636 0.33 -0.4
3,830,566 + HP15_3636 0.33 +0.4
3,830,574 + HP15_3636 0.34 -1.3
3,830,574 + HP15_3636 0.34 +1.5
3,830,580 - HP15_3636 0.34 -0.2
3,830,599 - HP15_3636 0.35 -0.8
3,830,604 + HP15_3636 0.35 -0.8
3,830,612 - HP15_3636 0.35 -0.8
3,830,612 - HP15_3636 0.35 +0.7
3,830,642 - HP15_3636 0.37 +0.2

Or see this region's nucleotide sequence