Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03770 and PGA1_c03780 are separated by 150 nucleotides PGA1_c03780 and PGA1_c03790 are separated by 212 nucleotides PGA1_c03790 and PGA1_c03800 are separated by 507 nucleotides
PGA1_c03770: PGA1_c03770 - hypothetical protein, at 362,055 to 362,969
_c03770
PGA1_c03780: PGA1_c03780 - succinate dehydrogenase iron-sulfur subunit, at 363,120 to 363,899
_c03780
PGA1_c03790: PGA1_c03790 - hypothetical protein, at 364,112 to 364,303
_c03790
PGA1_c03800: PGA1_c03800 - putative lysine/ornithine decarboxylase, at 364,811 to 365,992
_c03800
Position (kb) 363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 362.494 kb on + strand, within PGA1_c03770 at 362.516 kb on + strand, within PGA1_c03770 at 362.516 kb on + strand, within PGA1_c03770 at 362.630 kb on + strand, within PGA1_c03770 at 362.735 kb on + strand, within PGA1_c03770 at 362.737 kb on - strand, within PGA1_c03770 at 362.754 kb on + strand, within PGA1_c03770 at 362.766 kb on + strand, within PGA1_c03770 at 362.766 kb on + strand, within PGA1_c03770 at 362.852 kb on - strand, within PGA1_c03770 at 362.884 kb on - strand at 362.899 kb on + strand at 362.963 kb on + strand at 362.963 kb on + strand at 362.963 kb on + strand at 362.971 kb on - strand at 362.971 kb on - strand at 362.982 kb on - strand at 362.982 kb on - strand at 363.067 kb on + strand at 363.906 kb on - strand at 363.928 kb on - strand at 363.933 kb on + strand at 363.933 kb on + strand at 363.970 kb on + strand at 364.001 kb on + strand at 364.006 kb on + strand at 364.083 kb on - strand at 364.109 kb on + strand at 364.175 kb on - strand, within PGA1_c03790 at 364.176 kb on - strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.219 kb on + strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.292 kb on + strand at 364.350 kb on - strand at 364.441 kb on - strand at 364.441 kb on - strand at 364.483 kb on - strand at 364.488 kb on + strand at 364.488 kb on - strand at 364.488 kb on - strand at 364.528 kb on - strand at 364.598 kb on + strand at 364.601 kb on - strand at 364.606 kb on - strand at 364.677 kb on + strand at 364.724 kb on + strand at 364.731 kb on + strand at 364.733 kb on - strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.890 kb on - strand at 364.890 kb on - strand at 364.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 362,494 + PGA1_c03770 0.48 +1.5 362,516 + PGA1_c03770 0.50 -0.3 362,516 + PGA1_c03770 0.50 -0.6 362,630 + PGA1_c03770 0.63 -0.3 362,735 + PGA1_c03770 0.74 +1.6 362,737 - PGA1_c03770 0.75 -1.0 362,754 + PGA1_c03770 0.76 +0.9 362,766 + PGA1_c03770 0.78 +1.5 362,766 + PGA1_c03770 0.78 +0.0 362,852 - PGA1_c03770 0.87 +1.3 362,884 - +0.1 362,899 + -0.4 362,963 + -0.5 362,963 + +1.8 362,963 + +0.7 362,971 - +0.4 362,971 - -1.2 362,982 - +0.5 362,982 - -1.7 363,067 + +0.1 363,906 - +0.1 363,928 - -0.6 363,933 + +0.6 363,933 + +0.8 363,970 + -2.7 364,001 + +1.0 364,006 + -0.1 364,083 - -2.4 364,109 + +1.4 364,175 - PGA1_c03790 0.33 -1.6 364,176 - PGA1_c03790 0.33 +0.6 364,213 + PGA1_c03790 0.53 -1.4 364,213 + PGA1_c03790 0.53 +0.7 364,213 + PGA1_c03790 0.53 -1.2 364,213 + PGA1_c03790 0.53 -0.5 364,213 + PGA1_c03790 0.53 -0.4 364,213 + PGA1_c03790 0.53 +0.6 364,213 + PGA1_c03790 0.53 -1.9 364,213 + PGA1_c03790 0.53 -0.8 364,219 + PGA1_c03790 0.56 -1.1 364,221 - PGA1_c03790 0.57 -0.7 364,221 - PGA1_c03790 0.57 +0.0 364,221 - PGA1_c03790 0.57 -2.9 364,221 - PGA1_c03790 0.57 -0.3 364,221 - PGA1_c03790 0.57 -0.1 364,221 - PGA1_c03790 0.57 -0.2 364,221 - PGA1_c03790 0.57 -2.8 364,221 - PGA1_c03790 0.57 -2.8 364,292 + +0.7 364,350 - -1.2 364,441 - -0.4 364,441 - -1.6 364,483 - -0.6 364,488 + -1.2 364,488 - +0.4 364,488 - +0.0 364,528 - +0.9 364,598 + -2.7 364,601 - -1.9 364,606 - -0.4 364,677 + -1.3 364,724 + -1.3 364,731 + +0.0 364,733 - -0.9 364,882 + -0.4 364,882 + -0.6 364,882 + -0.1 364,882 + +0.0 364,890 - +1.5 364,890 - +2.0 364,890 - +1.4
Or see this region's nucleotide sequence