Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03730 and PGA1_c03740 are separated by 192 nucleotides PGA1_c03740 and PGA1_c03750 are separated by 18 nucleotides PGA1_c03750 and PGA1_c03760 are separated by 15 nucleotides
PGA1_c03730: PGA1_c03730 - Protein of unknown function (DUF1194)., at 358,494 to 359,183
_c03730
PGA1_c03740: PGA1_c03740 - succinate dehydrogenase cytochrome b556 subunit, at 359,376 to 359,759
_c03740
PGA1_c03750: PGA1_c03750 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 359,778 to 360,149
_c03750
PGA1_c03760: PGA1_c03760 - succinate dehydrogenase flavoprotein subunit, at 360,165 to 361,970
_c03760
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.778 kb on - strand, within PGA1_c03730 at 358.825 kb on - strand, within PGA1_c03730 at 358.834 kb on + strand, within PGA1_c03730 at 358.840 kb on - strand, within PGA1_c03730 at 358.842 kb on - strand, within PGA1_c03730 at 358.853 kb on + strand, within PGA1_c03730 at 358.866 kb on - strand, within PGA1_c03730 at 358.876 kb on - strand, within PGA1_c03730 at 358.881 kb on + strand, within PGA1_c03730 at 358.897 kb on - strand, within PGA1_c03730 at 358.943 kb on - strand, within PGA1_c03730 at 358.944 kb on - strand, within PGA1_c03730 at 358.944 kb on - strand, within PGA1_c03730 at 358.999 kb on + strand, within PGA1_c03730 at 358.999 kb on + strand, within PGA1_c03730 at 358.999 kb on + strand, within PGA1_c03730 at 359.017 kb on - strand, within PGA1_c03730 at 359.053 kb on - strand, within PGA1_c03730 at 359.065 kb on + strand, within PGA1_c03730 at 359.065 kb on + strand, within PGA1_c03730 at 359.070 kb on - strand, within PGA1_c03730 at 359.073 kb on - strand, within PGA1_c03730 at 359.086 kb on + strand, within PGA1_c03730 at 359.094 kb on - strand, within PGA1_c03730 at 359.094 kb on - strand, within PGA1_c03730 at 359.106 kb on - strand, within PGA1_c03730 at 359.139 kb on - strand at 359.159 kb on - strand at 359.161 kb on + strand at 359.161 kb on + strand at 359.161 kb on + strand at 359.169 kb on - strand at 359.169 kb on - strand at 359.169 kb on - strand at 359.203 kb on - strand at 359.758 kb on + strand at 360.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 358,778 - PGA1_c03730 0.41 +0.0 358,825 - PGA1_c03730 0.48 -1.7 358,834 + PGA1_c03730 0.49 +0.0 358,840 - PGA1_c03730 0.50 -1.4 358,842 - PGA1_c03730 0.50 -1.2 358,853 + PGA1_c03730 0.52 -0.2 358,866 - PGA1_c03730 0.54 -0.5 358,876 - PGA1_c03730 0.55 -1.0 358,881 + PGA1_c03730 0.56 +0.0 358,897 - PGA1_c03730 0.58 -1.4 358,943 - PGA1_c03730 0.65 +1.4 358,944 - PGA1_c03730 0.65 -0.3 358,944 - PGA1_c03730 0.65 +0.0 358,999 + PGA1_c03730 0.73 -0.3 358,999 + PGA1_c03730 0.73 -2.2 358,999 + PGA1_c03730 0.73 +0.6 359,017 - PGA1_c03730 0.76 -1.8 359,053 - PGA1_c03730 0.81 +0.4 359,065 + PGA1_c03730 0.83 -0.6 359,065 + PGA1_c03730 0.83 -0.6 359,070 - PGA1_c03730 0.83 +1.3 359,073 - PGA1_c03730 0.84 +2.2 359,086 + PGA1_c03730 0.86 +0.4 359,094 - PGA1_c03730 0.87 -0.2 359,094 - PGA1_c03730 0.87 +2.0 359,106 - PGA1_c03730 0.89 -0.8 359,139 - -1.9 359,159 - -0.8 359,161 + -0.2 359,161 + -1.0 359,161 + -0.6 359,169 - -2.2 359,169 - -2.2 359,169 - +0.7 359,203 - +0.4 359,758 + +0.1 360,126 + -0.8
Or see this region's nucleotide sequence