Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35170

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35150 and PGA1_c35160 overlap by 4 nucleotidesPGA1_c35160 and PGA1_c35170 overlap by 8 nucleotidesPGA1_c35170 and PGA1_c35180 are separated by 75 nucleotidesPGA1_c35180 and PGA1_c35190 are separated by 78 nucleotides PGA1_c35150: PGA1_c35150 - shikimate dehydrogenase AroE, at 3,687,966 to 3,688,799 _c35150 PGA1_c35160: PGA1_c35160 - dephospho-CoA kinase CoaE, at 3,688,796 to 3,689,389 _c35160 PGA1_c35170: PGA1_c35170 - DNA polymerase III subunit epsilon, at 3,689,382 to 3,690,119 _c35170 PGA1_c35180: PGA1_c35180 - protein-export protein SecB, at 3,690,195 to 3,690,689 _c35180 PGA1_c35190: PGA1_c35190 - putative protein FxsA, at 3,690,768 to 3,691,274 _c35190 Position (kb) 3689 3690 3691Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3688.793 kb on + strandat 3688.793 kb on + strandat 3688.793 kb on + strandat 3689.458 kb on + strand, within PGA1_c35170at 3689.505 kb on + strand, within PGA1_c35170at 3689.568 kb on - strand, within PGA1_c35170at 3689.724 kb on - strand, within PGA1_c35170at 3689.989 kb on + strand, within PGA1_c35170at 3690.007 kb on + strand, within PGA1_c35170at 3690.093 kb on + strandat 3690.096 kb on + strandat 3690.096 kb on + strandat 3690.096 kb on + strandat 3690.098 kb on + strandat 3690.104 kb on - strandat 3690.161 kb on - strandat 3690.186 kb on + strandat 3690.186 kb on + strandat 3690.186 kb on + strandat 3690.194 kb on - strandat 3690.194 kb on - strandat 3690.194 kb on - strandat 3690.204 kb on + strandat 3690.225 kb on - strandat 3690.225 kb on - strandat 3690.225 kb on - strandat 3690.225 kb on - strandat 3690.766 kb on + strandat 3690.771 kb on + strandat 3690.779 kb on + strandat 3690.860 kb on - strand, within PGA1_c35190at 3690.860 kb on - strand, within PGA1_c35190at 3690.880 kb on + strand, within PGA1_c35190at 3690.923 kb on + strand, within PGA1_c35190at 3690.987 kb on + strand, within PGA1_c35190at 3690.987 kb on + strand, within PGA1_c35190at 3690.995 kb on - strand, within PGA1_c35190at 3691.029 kb on - strand, within PGA1_c35190at 3691.036 kb on - strand, within PGA1_c35190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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3,688,793 + +1.0
3,688,793 + +0.4
3,688,793 + +1.0
3,689,458 + PGA1_c35170 0.10 +1.3
3,689,505 + PGA1_c35170 0.17 +4.5
3,689,568 - PGA1_c35170 0.25 +3.5
3,689,724 - PGA1_c35170 0.46 +3.3
3,689,989 + PGA1_c35170 0.82 +2.1
3,690,007 + PGA1_c35170 0.85 -0.6
3,690,093 + -1.3
3,690,096 + +0.7
3,690,096 + +0.8
3,690,096 + -1.1
3,690,098 + -0.7
3,690,104 - -0.3
3,690,161 - +0.1
3,690,186 + -0.3
3,690,186 + +0.3
3,690,186 + -1.0
3,690,194 - +0.9
3,690,194 - +0.8
3,690,194 - +0.5
3,690,204 + +0.7
3,690,225 - -0.7
3,690,225 - -0.9
3,690,225 - +1.1
3,690,225 - +2.7
3,690,766 + -1.6
3,690,771 + +0.4
3,690,779 + +0.7
3,690,860 - PGA1_c35190 0.18 +1.7
3,690,860 - PGA1_c35190 0.18 +2.2
3,690,880 + PGA1_c35190 0.22 +0.2
3,690,923 + PGA1_c35190 0.31 +1.6
3,690,987 + PGA1_c35190 0.43 -0.5
3,690,987 + PGA1_c35190 0.43 +0.2
3,690,995 - PGA1_c35190 0.45 -3.1
3,691,029 - PGA1_c35190 0.51 +0.8
3,691,036 - PGA1_c35190 0.53 +1.1

Or see this region's nucleotide sequence