Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03520 and PGA1_c03530 overlap by 23 nucleotides PGA1_c03530 and PGA1_c03540 are separated by 78 nucleotides PGA1_c03540 and PGA1_c03550 are separated by 120 nucleotides
PGA1_c03520: PGA1_c03520 - putative acyltransferase, at 339,563 to 340,312
_c03520
PGA1_c03530: PGA1_c03530 - pyridoxamine 5'-phosphate oxidase-like protein, at 340,290 to 340,895
_c03530
PGA1_c03540: PGA1_c03540 - conserved hypothetical protein, at 340,974 to 341,288
_c03540
PGA1_c03550: PGA1_c03550 - dihydrolipoyl dehydrogenase 2, at 341,409 to 342,806
_c03550
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 340.279 kb on - strand at 340.336 kb on + strand at 340.344 kb on - strand at 340.355 kb on + strand, within PGA1_c03530 at 340.363 kb on - strand, within PGA1_c03530 at 340.432 kb on - strand, within PGA1_c03530 at 340.437 kb on - strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.504 kb on + strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.512 kb on - strand, within PGA1_c03530 at 340.648 kb on + strand, within PGA1_c03530 at 340.665 kb on + strand, within PGA1_c03530 at 340.755 kb on + strand, within PGA1_c03530 at 340.798 kb on + strand, within PGA1_c03530 at 340.831 kb on + strand, within PGA1_c03530 at 340.896 kb on + strand at 340.897 kb on + strand at 340.899 kb on - strand at 340.902 kb on + strand at 340.930 kb on + strand at 340.936 kb on - strand at 340.956 kb on + strand at 340.956 kb on + strand at 340.980 kb on + strand at 340.988 kb on - strand at 340.988 kb on - strand at 340.989 kb on - strand at 341.076 kb on - strand, within PGA1_c03540 at 341.162 kb on + strand, within PGA1_c03540 at 341.168 kb on - strand, within PGA1_c03540 at 341.170 kb on + strand, within PGA1_c03540 at 341.170 kb on - strand, within PGA1_c03540 at 341.257 kb on - strand at 341.268 kb on - strand at 341.268 kb on - strand at 341.270 kb on + strand at 341.278 kb on - strand at 341.278 kb on - strand at 341.278 kb on - strand at 341.320 kb on + strand at 341.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 340,279 - -0.4 340,336 + +3.6 340,344 - -0.1 340,355 + PGA1_c03530 0.11 -2.5 340,363 - PGA1_c03530 0.12 -0.3 340,432 - PGA1_c03530 0.23 +0.0 340,437 - PGA1_c03530 0.24 +1.5 340,504 + PGA1_c03530 0.35 +0.5 340,504 + PGA1_c03530 0.35 -1.3 340,504 + PGA1_c03530 0.35 -0.8 340,512 - PGA1_c03530 0.37 +1.0 340,512 - PGA1_c03530 0.37 +2.0 340,512 - PGA1_c03530 0.37 -1.7 340,648 + PGA1_c03530 0.59 -1.1 340,665 + PGA1_c03530 0.62 +1.0 340,755 + PGA1_c03530 0.77 -0.3 340,798 + PGA1_c03530 0.84 -0.1 340,831 + PGA1_c03530 0.89 -0.5 340,896 + -2.0 340,897 + +0.0 340,899 - -1.0 340,902 + -1.3 340,930 + +1.5 340,936 - +0.4 340,956 + +1.4 340,956 + -0.5 340,980 + +1.5 340,988 - -0.4 340,988 - -0.7 340,989 - -1.4 341,076 - PGA1_c03540 0.32 +0.3 341,162 + PGA1_c03540 0.60 +1.0 341,168 - PGA1_c03540 0.62 +2.0 341,170 + PGA1_c03540 0.62 +0.7 341,170 - PGA1_c03540 0.62 -0.5 341,257 - +2.0 341,268 - -1.4 341,268 - +0.3 341,270 + +0.2 341,278 - +0.0 341,278 - +0.0 341,278 - +1.3 341,320 + +1.0 341,329 - +1.2
Or see this region's nucleotide sequence