Strain Fitness in Marinobacter adhaerens HP15 around HP15_3288

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3286 and HP15_3287 overlap by 4 nucleotidesHP15_3287 and HP15_3288 are separated by 178 nucleotidesHP15_3288 and HP15_3289 are separated by 16 nucleotidesHP15_3289 and HP15_3290 are separated by 11 nucleotides HP15_3286: HP15_3286 - ribulose-phosphate 3-epimerase-like protein, at 3,444,492 to 3,445,178 _3286 HP15_3287: HP15_3287 - phosphoglycolate phosphatase, at 3,445,175 to 3,445,864 _3287 HP15_3288: HP15_3288 - anthranilate synthase component I, at 3,446,043 to 3,447,584 _3288 HP15_3289: HP15_3289 - para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II, at 3,447,601 to 3,448,182 _3289 HP15_3290: HP15_3290 - anthranilate phosphoribosyltransferase, at 3,448,194 to 3,449,222 _3290 Position (kb) 3446 3447 3448Strain fitness (log2 ratio) -2 -1 0 1 2at 3445.190 kb on - strandat 3445.206 kb on + strandat 3445.214 kb on - strandat 3445.214 kb on - strandat 3445.241 kb on + strandat 3445.243 kb on + strandat 3445.254 kb on - strand, within HP15_3287at 3445.330 kb on + strand, within HP15_3287at 3445.330 kb on + strand, within HP15_3287at 3445.338 kb on - strand, within HP15_3287at 3445.421 kb on - strand, within HP15_3287at 3445.534 kb on - strand, within HP15_3287at 3445.611 kb on + strand, within HP15_3287at 3445.672 kb on + strand, within HP15_3287at 3445.672 kb on + strand, within HP15_3287at 3445.680 kb on - strand, within HP15_3287at 3445.689 kb on + strand, within HP15_3287at 3445.883 kb on - strandat 3445.920 kb on + strandat 3445.964 kb on + strandat 3446.198 kb on + strand, within HP15_3288at 3446.221 kb on + strand, within HP15_3288at 3446.221 kb on + strand, within HP15_3288at 3446.298 kb on + strand, within HP15_3288at 3446.306 kb on - strand, within HP15_3288at 3446.502 kb on + strand, within HP15_3288at 3446.904 kb on - strand, within HP15_3288at 3447.051 kb on + strand, within HP15_3288at 3447.262 kb on + strand, within HP15_3288at 3447.345 kb on - strand, within HP15_3288at 3447.433 kb on - strandat 3447.462 kb on + strandat 3447.651 kb on + strandat 3447.668 kb on + strand, within HP15_3289at 3447.714 kb on + strand, within HP15_3289at 3447.749 kb on + strand, within HP15_3289at 3447.749 kb on + strand, within HP15_3289at 3447.902 kb on - strand, within HP15_3289at 3448.009 kb on - strand, within HP15_3289at 3448.017 kb on - strand, within HP15_3289at 3448.019 kb on - strand, within HP15_3289at 3448.027 kb on - strand, within HP15_3289at 3448.027 kb on - strand, within HP15_3289at 3448.098 kb on + strand, within HP15_3289at 3448.108 kb on + strand, within HP15_3289at 3448.163 kb on - strandat 3448.217 kb on - strandat 3448.270 kb on + strandat 3448.289 kb on + strandat 3448.405 kb on - strand, within HP15_3290at 3448.450 kb on + strand, within HP15_3290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,445,190 - -0.2
3,445,206 + -0.4
3,445,214 - +0.9
3,445,214 - -0.1
3,445,241 + +0.2
3,445,243 + -0.1
3,445,254 - HP15_3287 0.11 -0.4
3,445,330 + HP15_3287 0.22 +2.1
3,445,330 + HP15_3287 0.22 +1.0
3,445,338 - HP15_3287 0.24 +0.3
3,445,421 - HP15_3287 0.36 +0.2
3,445,534 - HP15_3287 0.52 -0.8
3,445,611 + HP15_3287 0.63 -0.8
3,445,672 + HP15_3287 0.72 +0.4
3,445,672 + HP15_3287 0.72 +0.5
3,445,680 - HP15_3287 0.73 -0.7
3,445,689 + HP15_3287 0.74 +0.8
3,445,883 - -1.7
3,445,920 + +0.2
3,445,964 + +0.1
3,446,198 + HP15_3288 0.10 -1.0
3,446,221 + HP15_3288 0.12 -0.4
3,446,221 + HP15_3288 0.12 -0.1
3,446,298 + HP15_3288 0.17 -0.1
3,446,306 - HP15_3288 0.17 -0.4
3,446,502 + HP15_3288 0.30 -1.3
3,446,904 - HP15_3288 0.56 -1.3
3,447,051 + HP15_3288 0.65 -0.6
3,447,262 + HP15_3288 0.79 -1.6
3,447,345 - HP15_3288 0.84 -1.5
3,447,433 - -1.3
3,447,462 + -1.0
3,447,651 + -0.9
3,447,668 + HP15_3289 0.12 -1.2
3,447,714 + HP15_3289 0.19 -0.3
3,447,749 + HP15_3289 0.25 -0.9
3,447,749 + HP15_3289 0.25 -0.7
3,447,902 - HP15_3289 0.52 -1.1
3,448,009 - HP15_3289 0.70 -0.3
3,448,017 - HP15_3289 0.71 -1.0
3,448,019 - HP15_3289 0.72 -1.0
3,448,027 - HP15_3289 0.73 -1.3
3,448,027 - HP15_3289 0.73 -0.5
3,448,098 + HP15_3289 0.85 -1.1
3,448,108 + HP15_3289 0.87 -1.0
3,448,163 - -1.6
3,448,217 - +1.3
3,448,270 + -1.3
3,448,289 + -1.9
3,448,405 - HP15_3290 0.21 -1.5
3,448,450 + HP15_3290 0.25 +0.2

Or see this region's nucleotide sequence