Strain Fitness in Marinobacter adhaerens HP15 around HP15_3287

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3285 and HP15_3286 are separated by 117 nucleotidesHP15_3286 and HP15_3287 overlap by 4 nucleotidesHP15_3287 and HP15_3288 are separated by 178 nucleotides HP15_3285: HP15_3285 - conserved hypothetical protein, secreted, at 3,443,418 to 3,444,374 _3285 HP15_3286: HP15_3286 - ribulose-phosphate 3-epimerase-like protein, at 3,444,492 to 3,445,178 _3286 HP15_3287: HP15_3287 - phosphoglycolate phosphatase, at 3,445,175 to 3,445,864 _3287 HP15_3288: HP15_3288 - anthranilate synthase component I, at 3,446,043 to 3,447,584 _3288 Position (kb) 3445 3446Strain fitness (log2 ratio) -1 0 1 2at 3444.211 kb on + strand, within HP15_3285at 3444.211 kb on + strand, within HP15_3285at 3444.219 kb on - strand, within HP15_3285at 3444.219 kb on - strand, within HP15_3285at 3444.221 kb on + strand, within HP15_3285at 3444.289 kb on - strandat 3444.289 kb on - strandat 3444.313 kb on - strandat 3444.318 kb on - strandat 3444.323 kb on - strandat 3445.190 kb on - strandat 3445.206 kb on + strandat 3445.214 kb on - strandat 3445.214 kb on - strandat 3445.241 kb on + strandat 3445.243 kb on + strandat 3445.254 kb on - strand, within HP15_3287at 3445.330 kb on + strand, within HP15_3287at 3445.330 kb on + strand, within HP15_3287at 3445.338 kb on - strand, within HP15_3287at 3445.421 kb on - strand, within HP15_3287at 3445.534 kb on - strand, within HP15_3287at 3445.611 kb on + strand, within HP15_3287at 3445.672 kb on + strand, within HP15_3287at 3445.672 kb on + strand, within HP15_3287at 3445.680 kb on - strand, within HP15_3287at 3445.689 kb on + strand, within HP15_3287at 3445.883 kb on - strandat 3445.920 kb on + strandat 3445.964 kb on + strandat 3446.198 kb on + strand, within HP15_3288at 3446.221 kb on + strand, within HP15_3288at 3446.221 kb on + strand, within HP15_3288at 3446.298 kb on + strand, within HP15_3288at 3446.306 kb on - strand, within HP15_3288at 3446.502 kb on + strand, within HP15_3288

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,444,211 + HP15_3285 0.83 -0.7
3,444,211 + HP15_3285 0.83 +0.5
3,444,219 - HP15_3285 0.84 +0.0
3,444,219 - HP15_3285 0.84 -0.1
3,444,221 + HP15_3285 0.84 +0.1
3,444,289 - +0.5
3,444,289 - -0.0
3,444,313 - +1.1
3,444,318 - +0.8
3,444,323 - -0.7
3,445,190 - -0.2
3,445,206 + -0.4
3,445,214 - +0.9
3,445,214 - -0.1
3,445,241 + +0.2
3,445,243 + -0.1
3,445,254 - HP15_3287 0.11 -0.4
3,445,330 + HP15_3287 0.22 +2.1
3,445,330 + HP15_3287 0.22 +1.0
3,445,338 - HP15_3287 0.24 +0.3
3,445,421 - HP15_3287 0.36 +0.2
3,445,534 - HP15_3287 0.52 -0.8
3,445,611 + HP15_3287 0.63 -0.8
3,445,672 + HP15_3287 0.72 +0.4
3,445,672 + HP15_3287 0.72 +0.5
3,445,680 - HP15_3287 0.73 -0.7
3,445,689 + HP15_3287 0.74 +0.8
3,445,883 - -1.7
3,445,920 + +0.2
3,445,964 + +0.1
3,446,198 + HP15_3288 0.10 -1.0
3,446,221 + HP15_3288 0.12 -0.4
3,446,221 + HP15_3288 0.12 -0.1
3,446,298 + HP15_3288 0.17 -0.1
3,446,306 - HP15_3288 0.17 -0.4
3,446,502 + HP15_3288 0.30 -1.3

Or see this region's nucleotide sequence