Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03380

Experiment: m.b. Fusidic 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c03360 and PGA1_c03365 are separated by 156 nucleotidesPGA1_c03365 and PGA1_c03370 are separated by 163 nucleotidesPGA1_c03370 and PGA1_c03380 are separated by 109 nucleotidesPGA1_c03380 and PGA1_c03390 are separated by 394 nucleotides PGA1_c03360: PGA1_c03360 - Predicted O-methyltransferase, at 322,693 to 323,460 _c03360 PGA1_c03365: PGA1_c03365 - Uncharacterized small protein, at 323,617 to 323,796 _c03365 PGA1_c03370: PGA1_c03370 - hypothetical protein, at 323,960 to 324,166 _c03370 PGA1_c03380: PGA1_c03380 - putative glycine cleavage system transcriptional activator, at 324,276 to 325,157 _c03380 PGA1_c03390: PGA1_c03390 - acetoacetyl-CoA reductase PhaB, at 325,552 to 326,274 _c03390 Position (kb) 324 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 323.440 kb on + strandat 323.445 kb on + strandat 323.445 kb on + strandat 323.445 kb on + strandat 323.445 kb on + strandat 323.504 kb on - strandat 323.635 kb on - strand, within PGA1_c03365at 323.685 kb on + strand, within PGA1_c03365at 323.702 kb on + strand, within PGA1_c03365at 323.777 kb on - strand, within PGA1_c03365at 323.777 kb on - strand, within PGA1_c03365at 323.777 kb on - strand, within PGA1_c03365at 323.813 kb on + strandat 323.847 kb on - strandat 323.847 kb on - strandat 323.868 kb on + strandat 323.915 kb on - strandat 323.923 kb on + strandat 324.017 kb on + strand, within PGA1_c03370at 324.017 kb on + strand, within PGA1_c03370at 324.024 kb on + strand, within PGA1_c03370at 324.087 kb on - strand, within PGA1_c03370at 324.120 kb on + strand, within PGA1_c03370at 324.128 kb on + strand, within PGA1_c03370at 324.128 kb on + strand, within PGA1_c03370at 324.199 kb on - strandat 324.222 kb on + strandat 324.227 kb on + strandat 324.232 kb on + strandat 324.235 kb on - strandat 324.235 kb on - strandat 324.235 kb on - strandat 324.235 kb on - strandat 324.240 kb on - strandat 324.277 kb on + strandat 324.278 kb on + strandat 324.278 kb on + strandat 324.278 kb on + strandat 324.286 kb on - strandat 324.286 kb on - strandat 324.286 kb on - strandat 324.339 kb on - strandat 324.370 kb on + strand, within PGA1_c03380at 324.420 kb on - strand, within PGA1_c03380at 324.434 kb on - strand, within PGA1_c03380at 324.503 kb on - strand, within PGA1_c03380at 324.503 kb on - strand, within PGA1_c03380at 324.503 kb on - strand, within PGA1_c03380at 324.503 kb on - strand, within PGA1_c03380at 324.516 kb on + strand, within PGA1_c03380at 324.549 kb on + strand, within PGA1_c03380at 324.557 kb on - strand, within PGA1_c03380at 324.557 kb on - strand, within PGA1_c03380at 324.571 kb on + strand, within PGA1_c03380at 324.573 kb on + strand, within PGA1_c03380at 324.615 kb on - strand, within PGA1_c03380at 324.618 kb on - strand, within PGA1_c03380at 324.623 kb on - strand, within PGA1_c03380at 324.680 kb on + strand, within PGA1_c03380at 324.718 kb on + strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.755 kb on + strand, within PGA1_c03380at 324.763 kb on - strand, within PGA1_c03380at 324.768 kb on + strand, within PGA1_c03380at 324.815 kb on - strand, within PGA1_c03380at 324.820 kb on - strand, within PGA1_c03380at 324.820 kb on - strand, within PGA1_c03380at 324.912 kb on - strand, within PGA1_c03380at 324.951 kb on + strand, within PGA1_c03380at 324.951 kb on + strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.966 kb on - strand, within PGA1_c03380at 324.966 kb on - strand, within PGA1_c03380at 324.984 kb on - strand, within PGA1_c03380at 325.045 kb on - strand, within PGA1_c03380at 325.072 kb on + strandat 325.131 kb on - strandat 325.155 kb on - strandat 325.194 kb on + strandat 325.317 kb on - strandat 325.343 kb on + strandat 325.377 kb on + strandat 325.400 kb on - strandat 325.407 kb on - strandat 325.421 kb on - strandat 325.448 kb on - strandat 325.519 kb on + strandat 325.624 kb on - strandat 325.634 kb on - strand, within PGA1_c03390at 325.634 kb on - strand, within PGA1_c03390at 325.762 kb on + strand, within PGA1_c03390at 325.770 kb on - strand, within PGA1_c03390at 325.791 kb on - strand, within PGA1_c03390at 325.807 kb on + strand, within PGA1_c03390at 325.840 kb on + strand, within PGA1_c03390at 325.843 kb on - strand, within PGA1_c03390at 325.845 kb on - strand, within PGA1_c03390at 325.922 kb on - strand, within PGA1_c03390at 325.922 kb on - strand, within PGA1_c03390at 325.937 kb on + strand, within PGA1_c03390at 325.937 kb on + strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.947 kb on - strand, within PGA1_c03390at 325.968 kb on - strand, within PGA1_c03390at 325.988 kb on + strand, within PGA1_c03390at 326.071 kb on - strand, within PGA1_c03390at 326.087 kb on + strand, within PGA1_c03390at 326.094 kb on + strand, within PGA1_c03390at 326.094 kb on + strand, within PGA1_c03390at 326.095 kb on - strand, within PGA1_c03390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
remove
323,440 + +0.5
323,445 + -0.9
323,445 + +0.5
323,445 + -0.5
323,445 + -0.9
323,504 - -0.7
323,635 - PGA1_c03365 0.10 +1.3
323,685 + PGA1_c03365 0.38 -1.6
323,702 + PGA1_c03365 0.47 +0.1
323,777 - PGA1_c03365 0.89 -1.8
323,777 - PGA1_c03365 0.89 +0.1
323,777 - PGA1_c03365 0.89 +1.6
323,813 + -2.5
323,847 - +1.3
323,847 - -1.4
323,868 + +0.8
323,915 - +0.5
323,923 + -2.4
324,017 + PGA1_c03370 0.28 +1.1
324,017 + PGA1_c03370 0.28 +0.5
324,024 + PGA1_c03370 0.31 +0.6
324,087 - PGA1_c03370 0.61 +0.1
324,120 + PGA1_c03370 0.77 +0.5
324,128 + PGA1_c03370 0.81 -1.9
324,128 + PGA1_c03370 0.81 -0.5
324,199 - -0.4
324,222 + +0.7
324,227 + +2.1
324,232 + +0.6
324,235 - +2.1
324,235 - +0.2
324,235 - +0.6
324,235 - +2.2
324,240 - -2.3
324,277 + +0.1
324,278 + -1.3
324,278 + +0.3
324,278 + -1.4
324,286 - -0.7
324,286 - -0.0
324,286 - -0.1
324,339 - +0.6
324,370 + PGA1_c03380 0.11 +0.7
324,420 - PGA1_c03380 0.16 -0.1
324,434 - PGA1_c03380 0.18 -0.8
324,503 - PGA1_c03380 0.26 +1.6
324,503 - PGA1_c03380 0.26 -2.8
324,503 - PGA1_c03380 0.26 -0.9
324,503 - PGA1_c03380 0.26 +0.7
324,516 + PGA1_c03380 0.27 -0.5
324,549 + PGA1_c03380 0.31 -0.1
324,557 - PGA1_c03380 0.32 -0.9
324,557 - PGA1_c03380 0.32 +1.4
324,571 + PGA1_c03380 0.33 +0.3
324,573 + PGA1_c03380 0.34 +0.3
324,615 - PGA1_c03380 0.38 -2.3
324,618 - PGA1_c03380 0.39 +1.4
324,623 - PGA1_c03380 0.39 -0.4
324,680 + PGA1_c03380 0.46 -1.7
324,718 + PGA1_c03380 0.50 +0.7
324,726 - PGA1_c03380 0.51 -0.8
324,726 - PGA1_c03380 0.51 -0.5
324,726 - PGA1_c03380 0.51 -0.5
324,755 + PGA1_c03380 0.54 -0.4
324,763 - PGA1_c03380 0.55 +0.3
324,768 + PGA1_c03380 0.56 +0.2
324,815 - PGA1_c03380 0.61 -0.9
324,820 - PGA1_c03380 0.62 -1.1
324,820 - PGA1_c03380 0.62 -0.8
324,912 - PGA1_c03380 0.72 -0.7
324,951 + PGA1_c03380 0.77 -1.8
324,951 + PGA1_c03380 0.77 -1.4
324,959 - PGA1_c03380 0.77 -1.4
324,959 - PGA1_c03380 0.77 -1.2
324,959 - PGA1_c03380 0.77 +0.2
324,959 - PGA1_c03380 0.77 -2.1
324,959 - PGA1_c03380 0.77 +1.4
324,966 - PGA1_c03380 0.78 -0.7
324,966 - PGA1_c03380 0.78 +0.4
324,984 - PGA1_c03380 0.80 -1.7
325,045 - PGA1_c03380 0.87 -0.9
325,072 + -0.5
325,131 - -0.7
325,155 - -0.1
325,194 + -0.4
325,317 - -0.3
325,343 + -0.9
325,377 + -2.0
325,400 - -1.3
325,407 - +1.6
325,421 - -1.3
325,448 - +1.4
325,519 + +2.1
325,624 - +0.1
325,634 - PGA1_c03390 0.11 +1.3
325,634 - PGA1_c03390 0.11 -1.0
325,762 + PGA1_c03390 0.29 +1.2
325,770 - PGA1_c03390 0.30 -0.8
325,791 - PGA1_c03390 0.33 -0.9
325,807 + PGA1_c03390 0.35 +0.2
325,840 + PGA1_c03390 0.40 -1.8
325,843 - PGA1_c03390 0.40 -1.6
325,845 - PGA1_c03390 0.41 -0.3
325,922 - PGA1_c03390 0.51 +0.9
325,922 - PGA1_c03390 0.51 -0.6
325,937 + PGA1_c03390 0.53 +0.3
325,937 + PGA1_c03390 0.53 +1.2
325,945 - PGA1_c03390 0.54 -2.0
325,945 - PGA1_c03390 0.54 -1.0
325,945 - PGA1_c03390 0.54 -0.4
325,945 - PGA1_c03390 0.54 -0.7
325,947 - PGA1_c03390 0.55 -0.5
325,968 - PGA1_c03390 0.58 +0.7
325,988 + PGA1_c03390 0.60 -0.1
326,071 - PGA1_c03390 0.72 -0.6
326,087 + PGA1_c03390 0.74 +2.1
326,094 + PGA1_c03390 0.75 -1.0
326,094 + PGA1_c03390 0.75 -0.5
326,095 - PGA1_c03390 0.75 +1.0

Or see this region's nucleotide sequence