Strain Fitness in Marinobacter adhaerens HP15 around HP15_3156

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3154 and HP15_3155 are separated by 18 nucleotidesHP15_3155 and HP15_3156 are separated by 15 nucleotidesHP15_3156 and HP15_3157 are separated by 154 nucleotides HP15_3154: HP15_3154 - class II aldolase/adducin family protein, at 3,307,328 to 3,308,098 _3154 HP15_3155: HP15_3155 - metal dependent phosphohydrolase, at 3,308,117 to 3,308,713 _3155 HP15_3156: HP15_3156 - glutamate-ammonia ligase, at 3,308,729 to 3,310,087 _3156 HP15_3157: HP15_3157 - homoserine O-acetyltransferase, at 3,310,242 to 3,311,273 _3157 Position (kb) 3308 3309 3310 3311Strain fitness (log2 ratio) -1 0 1 2at 3307.928 kb on + strand, within HP15_3154at 3307.936 kb on - strand, within HP15_3154at 3308.023 kb on + strandat 3308.023 kb on + strandat 3308.032 kb on - strandat 3308.171 kb on + strandat 3308.171 kb on + strandat 3308.253 kb on - strand, within HP15_3155at 3308.253 kb on - strand, within HP15_3155at 3308.393 kb on - strand, within HP15_3155at 3308.474 kb on - strand, within HP15_3155at 3308.620 kb on - strand, within HP15_3155at 3308.763 kb on + strandat 3308.863 kb on + strandat 3308.982 kb on - strand, within HP15_3156at 3308.983 kb on - strand, within HP15_3156at 3308.983 kb on - strand, within HP15_3156at 3309.095 kb on + strand, within HP15_3156at 3309.208 kb on + strand, within HP15_3156at 3309.230 kb on + strand, within HP15_3156at 3309.241 kb on + strand, within HP15_3156at 3309.306 kb on - strand, within HP15_3156at 3309.326 kb on + strand, within HP15_3156at 3309.345 kb on + strand, within HP15_3156at 3309.347 kb on + strand, within HP15_3156at 3309.473 kb on - strand, within HP15_3156at 3309.498 kb on + strand, within HP15_3156at 3309.541 kb on + strand, within HP15_3156at 3309.549 kb on - strand, within HP15_3156at 3309.564 kb on + strand, within HP15_3156at 3309.585 kb on - strand, within HP15_3156at 3309.613 kb on + strand, within HP15_3156at 3309.618 kb on + strand, within HP15_3156at 3309.621 kb on - strand, within HP15_3156at 3309.621 kb on - strand, within HP15_3156at 3309.637 kb on - strand, within HP15_3156at 3309.642 kb on + strand, within HP15_3156at 3309.749 kb on - strand, within HP15_3156at 3309.891 kb on + strand, within HP15_3156at 3309.919 kb on - strand, within HP15_3156at 3309.934 kb on + strand, within HP15_3156at 3309.934 kb on + strand, within HP15_3156at 3309.935 kb on - strand, within HP15_3156at 3309.994 kb on + strandat 3309.996 kb on - strandat 3310.002 kb on - strandat 3310.081 kb on - strandat 3310.425 kb on - strand, within HP15_3157at 3310.441 kb on + strand, within HP15_3157at 3310.481 kb on + strand, within HP15_3157at 3310.506 kb on + strand, within HP15_3157at 3310.506 kb on + strand, within HP15_3157at 3310.524 kb on + strand, within HP15_3157at 3310.532 kb on - strand, within HP15_3157at 3310.547 kb on - strand, within HP15_3157at 3310.688 kb on + strand, within HP15_3157at 3310.717 kb on - strand, within HP15_3157at 3310.717 kb on - strand, within HP15_3157at 3310.717 kb on - strand, within HP15_3157at 3310.717 kb on - strand, within HP15_3157at 3310.731 kb on + strand, within HP15_3157at 3310.744 kb on - strand, within HP15_3157at 3310.767 kb on + strand, within HP15_3157at 3310.767 kb on + strand, within HP15_3157at 3310.808 kb on + strand, within HP15_3157at 3310.979 kb on - strand, within HP15_3157at 3310.991 kb on - strand, within HP15_3157at 3310.993 kb on - strand, within HP15_3157at 3311.087 kb on + strand, within HP15_3157

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,307,928 + HP15_3154 0.78 +0.1
3,307,936 - HP15_3154 0.79 +0.0
3,308,023 + -0.2
3,308,023 + +0.4
3,308,032 - +0.7
3,308,171 + -0.3
3,308,171 + -0.0
3,308,253 - HP15_3155 0.23 +0.2
3,308,253 - HP15_3155 0.23 -1.7
3,308,393 - HP15_3155 0.46 -0.4
3,308,474 - HP15_3155 0.60 -0.7
3,308,620 - HP15_3155 0.84 -0.6
3,308,763 + +1.0
3,308,863 + -0.6
3,308,982 - HP15_3156 0.19 +0.5
3,308,983 - HP15_3156 0.19 +1.1
3,308,983 - HP15_3156 0.19 -0.6
3,309,095 + HP15_3156 0.27 -0.4
3,309,208 + HP15_3156 0.35 -0.1
3,309,230 + HP15_3156 0.37 +0.9
3,309,241 + HP15_3156 0.38 +1.6
3,309,306 - HP15_3156 0.42 +0.4
3,309,326 + HP15_3156 0.44 -0.4
3,309,345 + HP15_3156 0.45 +0.1
3,309,347 + HP15_3156 0.45 -0.3
3,309,473 - HP15_3156 0.55 -1.4
3,309,498 + HP15_3156 0.57 -0.1
3,309,541 + HP15_3156 0.60 -1.0
3,309,549 - HP15_3156 0.60 -0.3
3,309,564 + HP15_3156 0.61 +2.5
3,309,585 - HP15_3156 0.63 +1.5
3,309,613 + HP15_3156 0.65 +1.3
3,309,618 + HP15_3156 0.65 +0.2
3,309,621 - HP15_3156 0.66 -0.1
3,309,621 - HP15_3156 0.66 +0.7
3,309,637 - HP15_3156 0.67 -0.3
3,309,642 + HP15_3156 0.67 +0.4
3,309,749 - HP15_3156 0.75 -0.3
3,309,891 + HP15_3156 0.86 +0.9
3,309,919 - HP15_3156 0.88 +0.3
3,309,934 + HP15_3156 0.89 +0.5
3,309,934 + HP15_3156 0.89 +0.8
3,309,935 - HP15_3156 0.89 +0.4
3,309,994 + -0.0
3,309,996 - +0.4
3,310,002 - -0.7
3,310,081 - -0.4
3,310,425 - HP15_3157 0.18 -0.4
3,310,441 + HP15_3157 0.19 +0.0
3,310,481 + HP15_3157 0.23 -0.9
3,310,506 + HP15_3157 0.26 -0.5
3,310,506 + HP15_3157 0.26 -0.2
3,310,524 + HP15_3157 0.27 -1.0
3,310,532 - HP15_3157 0.28 -0.3
3,310,547 - HP15_3157 0.30 +0.1
3,310,688 + HP15_3157 0.43 -0.7
3,310,717 - HP15_3157 0.46 -1.1
3,310,717 - HP15_3157 0.46 +0.1
3,310,717 - HP15_3157 0.46 +0.9
3,310,717 - HP15_3157 0.46 +1.8
3,310,731 + HP15_3157 0.47 +1.9
3,310,744 - HP15_3157 0.49 +0.9
3,310,767 + HP15_3157 0.51 -0.6
3,310,767 + HP15_3157 0.51 -0.4
3,310,808 + HP15_3157 0.55 -0.6
3,310,979 - HP15_3157 0.71 +0.1
3,310,991 - HP15_3157 0.73 +0.1
3,310,993 - HP15_3157 0.73 -0.4
3,311,087 + HP15_3157 0.82 +0.4

Or see this region's nucleotide sequence