Strain Fitness in Marinobacter adhaerens HP15 around HP15_2963

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2962 and HP15_2963 are separated by 33 nucleotidesHP15_2963 and HP15_2964 overlap by 11 nucleotidesHP15_2964 and HP15_2965 are separated by 47 nucleotides HP15_2962: HP15_2962 - conserved hypothetical protein, secreted, at 3,106,757 to 3,108,001 _2962 HP15_2963: HP15_2963 - phosphoglycolate phosphatase, at 3,108,035 to 3,109,684 _2963 HP15_2964: HP15_2964 - hypothetical protein, at 3,109,674 to 3,109,802 _2964 HP15_2965: HP15_2965 - inner membrane protein, at 3,109,850 to 3,110,689 _2965 Position (kb) 3108 3109 3110Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3107.081 kb on - strand, within HP15_2962at 3107.191 kb on - strand, within HP15_2962at 3107.217 kb on + strand, within HP15_2962at 3107.239 kb on + strand, within HP15_2962at 3107.239 kb on + strand, within HP15_2962at 3107.247 kb on - strand, within HP15_2962at 3107.247 kb on - strand, within HP15_2962at 3107.254 kb on + strand, within HP15_2962at 3107.272 kb on - strand, within HP15_2962at 3107.317 kb on - strand, within HP15_2962at 3107.321 kb on + strand, within HP15_2962at 3107.356 kb on + strand, within HP15_2962at 3107.361 kb on + strand, within HP15_2962at 3107.361 kb on + strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.411 kb on + strand, within HP15_2962at 3107.433 kb on + strand, within HP15_2962at 3107.552 kb on + strand, within HP15_2962at 3107.584 kb on - strand, within HP15_2962at 3107.662 kb on - strand, within HP15_2962at 3107.753 kb on + strand, within HP15_2962at 3107.763 kb on + strand, within HP15_2962at 3107.771 kb on - strand, within HP15_2962at 3107.970 kb on + strandat 3107.985 kb on + strandat 3107.990 kb on + strandat 3107.990 kb on + strandat 3107.993 kb on - strandat 3108.056 kb on + strandat 3108.069 kb on + strandat 3108.069 kb on + strandat 3108.069 kb on + strandat 3108.070 kb on - strandat 3108.118 kb on - strandat 3108.188 kb on + strandat 3108.188 kb on + strandat 3108.188 kb on + strandat 3108.188 kb on + strandat 3108.300 kb on + strand, within HP15_2963at 3108.316 kb on + strand, within HP15_2963at 3108.316 kb on + strand, within HP15_2963at 3108.330 kb on + strand, within HP15_2963at 3108.445 kb on + strand, within HP15_2963at 3108.446 kb on + strand, within HP15_2963at 3108.480 kb on - strand, within HP15_2963at 3108.497 kb on + strand, within HP15_2963at 3108.501 kb on - strand, within HP15_2963at 3108.505 kb on + strand, within HP15_2963at 3108.507 kb on + strand, within HP15_2963at 3108.582 kb on - strand, within HP15_2963at 3108.582 kb on - strand, within HP15_2963at 3108.617 kb on - strand, within HP15_2963at 3108.763 kb on - strand, within HP15_2963at 3108.924 kb on - strand, within HP15_2963at 3108.924 kb on - strand, within HP15_2963at 3108.957 kb on - strand, within HP15_2963at 3108.970 kb on + strand, within HP15_2963at 3109.140 kb on + strand, within HP15_2963at 3109.182 kb on - strand, within HP15_2963at 3109.185 kb on + strand, within HP15_2963at 3109.249 kb on + strand, within HP15_2963at 3109.307 kb on - strand, within HP15_2963at 3109.332 kb on + strand, within HP15_2963at 3109.356 kb on + strand, within HP15_2963at 3109.396 kb on - strand, within HP15_2963at 3109.540 kb on - strandat 3109.600 kb on - strandat 3109.637 kb on - strandat 3109.723 kb on + strand, within HP15_2964at 3109.764 kb on - strand, within HP15_2964at 3109.835 kb on + strandat 3109.835 kb on + strandat 3109.840 kb on + strandat 3109.840 kb on + strandat 3109.848 kb on - strandat 3109.848 kb on - strandat 3109.856 kb on + strandat 3109.873 kb on + strandat 3109.905 kb on + strandat 3109.932 kb on - strandat 3109.942 kb on + strand, within HP15_2965at 3109.966 kb on + strand, within HP15_2965at 3109.984 kb on - strand, within HP15_2965at 3109.997 kb on - strand, within HP15_2965at 3110.098 kb on + strand, within HP15_2965at 3110.122 kb on + strand, within HP15_2965at 3110.122 kb on + strand, within HP15_2965at 3110.130 kb on - strand, within HP15_2965at 3110.130 kb on - strand, within HP15_2965at 3110.192 kb on + strand, within HP15_2965at 3110.458 kb on - strand, within HP15_2965at 3110.521 kb on - strand, within HP15_2965at 3110.530 kb on + strand, within HP15_2965at 3110.585 kb on - strand, within HP15_2965

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,107,081 - HP15_2962 0.26 +0.4
3,107,191 - HP15_2962 0.35 -0.6
3,107,217 + HP15_2962 0.37 -0.0
3,107,239 + HP15_2962 0.39 +0.2
3,107,239 + HP15_2962 0.39 -0.1
3,107,247 - HP15_2962 0.39 +0.8
3,107,247 - HP15_2962 0.39 +1.1
3,107,254 + HP15_2962 0.40 -0.4
3,107,272 - HP15_2962 0.41 +0.7
3,107,317 - HP15_2962 0.45 -0.9
3,107,321 + HP15_2962 0.45 +1.4
3,107,356 + HP15_2962 0.48 +1.2
3,107,361 + HP15_2962 0.49 -0.6
3,107,361 + HP15_2962 0.49 -0.2
3,107,369 - HP15_2962 0.49 -0.9
3,107,369 - HP15_2962 0.49 -0.6
3,107,369 - HP15_2962 0.49 +3.1
3,107,369 - HP15_2962 0.49 +0.6
3,107,369 - HP15_2962 0.49 +0.4
3,107,411 + HP15_2962 0.53 -0.2
3,107,433 + HP15_2962 0.54 -0.1
3,107,552 + HP15_2962 0.64 -0.7
3,107,584 - HP15_2962 0.66 -0.5
3,107,662 - HP15_2962 0.73 +0.9
3,107,753 + HP15_2962 0.80 -0.4
3,107,763 + HP15_2962 0.81 -1.9
3,107,771 - HP15_2962 0.81 -1.4
3,107,970 + -0.1
3,107,985 + +0.1
3,107,990 + +0.2
3,107,990 + -0.5
3,107,993 - +0.6
3,108,056 + +0.0
3,108,069 + -0.9
3,108,069 + -1.3
3,108,069 + -0.0
3,108,070 - +1.3
3,108,118 - +0.2
3,108,188 + +0.2
3,108,188 + -1.3
3,108,188 + +1.5
3,108,188 + +1.0
3,108,300 + HP15_2963 0.16 -0.3
3,108,316 + HP15_2963 0.17 -0.0
3,108,316 + HP15_2963 0.17 +0.5
3,108,330 + HP15_2963 0.18 -0.0
3,108,445 + HP15_2963 0.25 -0.1
3,108,446 + HP15_2963 0.25 -1.2
3,108,480 - HP15_2963 0.27 -0.3
3,108,497 + HP15_2963 0.28 +1.5
3,108,501 - HP15_2963 0.28 -0.1
3,108,505 + HP15_2963 0.28 -0.8
3,108,507 + HP15_2963 0.29 -0.3
3,108,582 - HP15_2963 0.33 +0.8
3,108,582 - HP15_2963 0.33 +1.1
3,108,617 - HP15_2963 0.35 +1.7
3,108,763 - HP15_2963 0.44 +0.6
3,108,924 - HP15_2963 0.54 +0.0
3,108,924 - HP15_2963 0.54 +1.0
3,108,957 - HP15_2963 0.56 +1.5
3,108,970 + HP15_2963 0.57 -1.7
3,109,140 + HP15_2963 0.67 +1.2
3,109,182 - HP15_2963 0.70 +1.5
3,109,185 + HP15_2963 0.70 -0.5
3,109,249 + HP15_2963 0.74 +0.1
3,109,307 - HP15_2963 0.77 +0.5
3,109,332 + HP15_2963 0.79 +0.2
3,109,356 + HP15_2963 0.80 +0.4
3,109,396 - HP15_2963 0.82 -0.2
3,109,540 - -0.5
3,109,600 - +0.3
3,109,637 - +0.6
3,109,723 + HP15_2964 0.38 +0.1
3,109,764 - HP15_2964 0.70 -1.0
3,109,835 + -0.4
3,109,835 + +0.9
3,109,840 + -0.0
3,109,840 + -0.2
3,109,848 - -0.0
3,109,848 - -0.6
3,109,856 + -0.5
3,109,873 + +0.4
3,109,905 + +0.1
3,109,932 - -0.0
3,109,942 + HP15_2965 0.11 +0.9
3,109,966 + HP15_2965 0.14 +0.1
3,109,984 - HP15_2965 0.16 -0.2
3,109,997 - HP15_2965 0.17 -0.9
3,110,098 + HP15_2965 0.30 +0.5
3,110,122 + HP15_2965 0.32 -0.2
3,110,122 + HP15_2965 0.32 +0.8
3,110,130 - HP15_2965 0.33 +0.5
3,110,130 - HP15_2965 0.33 -0.3
3,110,192 + HP15_2965 0.41 -0.0
3,110,458 - HP15_2965 0.72 -1.4
3,110,521 - HP15_2965 0.80 -2.4
3,110,530 + HP15_2965 0.81 -2.9
3,110,585 - HP15_2965 0.88 -0.1

Or see this region's nucleotide sequence