Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03100 and PGA1_c03110 are separated by 33 nucleotides PGA1_c03110 and PGA1_c03120 are separated by 32 nucleotides
PGA1_c03100: PGA1_c03100 - putative aminoglycoside efflux pump, at 296,920 to 300,315
_c03100
PGA1_c03110: PGA1_c03110 - NUDIX hydrolase, at 300,349 to 300,858
_c03110
PGA1_c03120: PGA1_c03120 - hypothetical protein, at 300,891 to 301,745
_c03120
Position (kb) 300
301 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 299.419 kb on - strand, within PGA1_c03100 at 299.516 kb on + strand, within PGA1_c03100 at 299.595 kb on - strand, within PGA1_c03100 at 299.623 kb on - strand, within PGA1_c03100 at 299.627 kb on + strand, within PGA1_c03100 at 299.678 kb on - strand, within PGA1_c03100 at 299.693 kb on - strand, within PGA1_c03100 at 299.886 kb on + strand, within PGA1_c03100 at 299.895 kb on + strand, within PGA1_c03100 at 299.949 kb on + strand, within PGA1_c03100 at 299.957 kb on - strand, within PGA1_c03100 at 300.019 kb on + strand at 300.019 kb on + strand at 300.089 kb on + strand at 300.205 kb on + strand at 300.215 kb on + strand at 300.319 kb on + strand at 300.425 kb on - strand, within PGA1_c03110 at 300.430 kb on - strand, within PGA1_c03110 at 300.539 kb on + strand, within PGA1_c03110 at 300.612 kb on + strand, within PGA1_c03110 at 300.620 kb on - strand, within PGA1_c03110 at 300.669 kb on - strand, within PGA1_c03110 at 300.707 kb on - strand, within PGA1_c03110 at 300.713 kb on + strand, within PGA1_c03110 at 300.743 kb on - strand, within PGA1_c03110 at 300.859 kb on + strand at 300.864 kb on + strand at 300.906 kb on + strand at 300.906 kb on + strand at 300.976 kb on + strand at 300.976 kb on + strand at 300.984 kb on - strand, within PGA1_c03120 at 301.036 kb on + strand, within PGA1_c03120 at 301.110 kb on - strand, within PGA1_c03120 at 301.172 kb on - strand, within PGA1_c03120 at 301.274 kb on + strand, within PGA1_c03120 at 301.282 kb on + strand, within PGA1_c03120 at 301.282 kb on - strand, within PGA1_c03120 at 301.302 kb on - strand, within PGA1_c03120 at 301.390 kb on - strand, within PGA1_c03120 at 301.435 kb on + strand, within PGA1_c03120 at 301.565 kb on + strand, within PGA1_c03120 at 301.687 kb on + strand at 301.687 kb on + strand at 301.713 kb on + strand at 301.733 kb on + strand at 301.741 kb on - strand at 301.750 kb on + strand at 301.753 kb on - strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.830 kb on + strand at 301.832 kb on - strand at 301.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 299,419 - PGA1_c03100 0.74 -0.9 299,516 + PGA1_c03100 0.76 +1.5 299,595 - PGA1_c03100 0.79 +0.3 299,623 - PGA1_c03100 0.80 +0.9 299,627 + PGA1_c03100 0.80 +0.5 299,678 - PGA1_c03100 0.81 +2.1 299,693 - PGA1_c03100 0.82 +0.1 299,886 + PGA1_c03100 0.87 +0.5 299,895 + PGA1_c03100 0.88 +0.1 299,949 + PGA1_c03100 0.89 +0.1 299,957 - PGA1_c03100 0.89 -0.5 300,019 + +1.1 300,019 + +0.2 300,089 + -1.4 300,205 + -1.3 300,215 + +0.7 300,319 + +3.1 300,425 - PGA1_c03110 0.15 +0.5 300,430 - PGA1_c03110 0.16 +0.1 300,539 + PGA1_c03110 0.37 -1.9 300,612 + PGA1_c03110 0.52 +1.2 300,620 - PGA1_c03110 0.53 +0.1 300,669 - PGA1_c03110 0.63 -0.8 300,707 - PGA1_c03110 0.70 -0.8 300,713 + PGA1_c03110 0.71 -0.5 300,743 - PGA1_c03110 0.77 +0.5 300,859 + +0.1 300,864 + -1.1 300,906 + +1.1 300,906 + -0.5 300,976 + -1.1 300,976 + -0.3 300,984 - PGA1_c03120 0.11 -0.3 301,036 + PGA1_c03120 0.17 +0.5 301,110 - PGA1_c03120 0.26 -0.8 301,172 - PGA1_c03120 0.33 -0.9 301,274 + PGA1_c03120 0.45 -1.3 301,282 + PGA1_c03120 0.46 +1.6 301,282 - PGA1_c03120 0.46 +0.1 301,302 - PGA1_c03120 0.48 -1.1 301,390 - PGA1_c03120 0.58 -1.3 301,435 + PGA1_c03120 0.64 -0.3 301,565 + PGA1_c03120 0.79 -0.2 301,687 + -1.5 301,687 + -0.8 301,713 + +1.3 301,733 + +1.1 301,741 - +2.1 301,750 + +1.2 301,753 - +0.3 301,829 + +0.2 301,829 + +2.3 301,829 + +0.5 301,829 + -1.4 301,830 + +2.1 301,832 - -1.1 301,837 - +1.8
Or see this region's nucleotide sequence