Strain Fitness in Marinobacter adhaerens HP15 around HP15_2859

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2857 and HP15_2858 are separated by 50 nucleotidesHP15_2858 and HP15_2859 are separated by 71 nucleotidesHP15_2859 and HP15_2860 are separated by 29 nucleotidesHP15_2860 and HP15_2861 are separated by 245 nucleotides HP15_2857: HP15_2857 - transcription termination factor rho, at 2,997,376 to 2,998,305 _2857 HP15_2858: HP15_2858 - hypothetical protein, at 2,998,356 to 2,998,508 _2858 HP15_2859: HP15_2859 - nucleoside 2-deoxyribosyltransferase, at 2,998,580 to 2,999,122 _2859 HP15_2860: HP15_2860 - methyltransferase, at 2,999,152 to 2,999,862 _2860 HP15_2861: HP15_2861 - conserved hypothetical protein, at 3,000,108 to 3,000,770 _2861 Position (kb) 2998 2999 3000Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2997.649 kb on - strand, within HP15_2857at 2997.698 kb on - strand, within HP15_2857at 2997.939 kb on - strand, within HP15_2857at 2997.941 kb on + strand, within HP15_2857at 2997.954 kb on - strand, within HP15_2857at 2997.954 kb on - strand, within HP15_2857at 2998.015 kb on - strand, within HP15_2857at 2998.060 kb on - strand, within HP15_2857at 2998.060 kb on - strand, within HP15_2857at 2998.145 kb on - strand, within HP15_2857at 2998.185 kb on + strand, within HP15_2857at 2998.185 kb on + strand, within HP15_2857at 2998.270 kb on - strandat 2998.307 kb on + strandat 2998.315 kb on - strandat 2998.406 kb on + strand, within HP15_2858at 2998.406 kb on + strand, within HP15_2858at 2998.466 kb on - strand, within HP15_2858at 2998.550 kb on - strandat 2998.640 kb on + strand, within HP15_2859at 2998.648 kb on - strand, within HP15_2859at 2998.695 kb on + strand, within HP15_2859at 2998.695 kb on + strand, within HP15_2859at 2998.695 kb on + strand, within HP15_2859at 2998.703 kb on - strand, within HP15_2859at 2998.854 kb on - strand, within HP15_2859at 2998.885 kb on + strand, within HP15_2859at 2998.885 kb on + strand, within HP15_2859at 2998.885 kb on + strand, within HP15_2859at 2998.885 kb on + strand, within HP15_2859at 2998.893 kb on - strand, within HP15_2859at 2998.893 kb on - strand, within HP15_2859at 2998.893 kb on - strand, within HP15_2859at 2998.893 kb on - strand, within HP15_2859at 2998.952 kb on - strand, within HP15_2859at 2998.981 kb on + strand, within HP15_2859at 2999.046 kb on + strand, within HP15_2859at 2999.074 kb on - strandat 2999.092 kb on - strandat 2999.094 kb on + strandat 2999.163 kb on + strandat 2999.252 kb on - strand, within HP15_2860at 2999.331 kb on + strand, within HP15_2860at 2999.333 kb on - strand, within HP15_2860at 2999.333 kb on - strand, within HP15_2860at 2999.387 kb on + strand, within HP15_2860at 2999.395 kb on - strand, within HP15_2860at 2999.425 kb on + strand, within HP15_2860at 2999.483 kb on - strand, within HP15_2860at 2999.483 kb on - strand, within HP15_2860at 2999.491 kb on + strand, within HP15_2860at 2999.499 kb on - strand, within HP15_2860at 2999.677 kb on - strand, within HP15_2860at 2999.700 kb on + strand, within HP15_2860at 2999.896 kb on + strandat 2999.911 kb on - strandat 3000.053 kb on - strandat 3000.099 kb on - strandat 3000.101 kb on + strandat 3000.106 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,997,649 - HP15_2857 0.29 +0.8
2,997,698 - HP15_2857 0.35 -0.0
2,997,939 - HP15_2857 0.61 +0.3
2,997,941 + HP15_2857 0.61 -0.1
2,997,954 - HP15_2857 0.62 -0.6
2,997,954 - HP15_2857 0.62 -0.4
2,998,015 - HP15_2857 0.69 -0.0
2,998,060 - HP15_2857 0.74 -0.2
2,998,060 - HP15_2857 0.74 -0.1
2,998,145 - HP15_2857 0.83 +0.9
2,998,185 + HP15_2857 0.87 +1.0
2,998,185 + HP15_2857 0.87 +0.4
2,998,270 - -0.0
2,998,307 + -0.6
2,998,315 - -0.3
2,998,406 + HP15_2858 0.33 +0.5
2,998,406 + HP15_2858 0.33 -0.4
2,998,466 - HP15_2858 0.72 -0.7
2,998,550 - +0.2
2,998,640 + HP15_2859 0.11 -0.2
2,998,648 - HP15_2859 0.13 -0.7
2,998,695 + HP15_2859 0.21 -0.0
2,998,695 + HP15_2859 0.21 +0.6
2,998,695 + HP15_2859 0.21 +0.1
2,998,703 - HP15_2859 0.23 +0.3
2,998,854 - HP15_2859 0.50 +0.1
2,998,885 + HP15_2859 0.56 -2.9
2,998,885 + HP15_2859 0.56 -0.9
2,998,885 + HP15_2859 0.56 -0.4
2,998,885 + HP15_2859 0.56 +0.2
2,998,893 - HP15_2859 0.58 -0.3
2,998,893 - HP15_2859 0.58 +0.2
2,998,893 - HP15_2859 0.58 -0.3
2,998,893 - HP15_2859 0.58 -1.9
2,998,952 - HP15_2859 0.69 -0.3
2,998,981 + HP15_2859 0.74 -0.2
2,999,046 + HP15_2859 0.86 -0.5
2,999,074 - -0.2
2,999,092 - +1.9
2,999,094 + -0.4
2,999,163 + -1.5
2,999,252 - HP15_2860 0.14 +0.6
2,999,331 + HP15_2860 0.25 +0.3
2,999,333 - HP15_2860 0.25 -0.7
2,999,333 - HP15_2860 0.25 +0.4
2,999,387 + HP15_2860 0.33 -0.6
2,999,395 - HP15_2860 0.34 +0.1
2,999,425 + HP15_2860 0.38 -2.2
2,999,483 - HP15_2860 0.47 -0.0
2,999,483 - HP15_2860 0.47 -0.9
2,999,491 + HP15_2860 0.48 -1.0
2,999,499 - HP15_2860 0.49 +0.1
2,999,677 - HP15_2860 0.74 -1.0
2,999,700 + HP15_2860 0.77 -0.0
2,999,896 + +1.0
2,999,911 - +0.6
3,000,053 - +0.2
3,000,099 - -1.4
3,000,101 + +0.4
3,000,106 + +1.2

Or see this region's nucleotide sequence