Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27650 and PGA1_c27660 are separated by 106 nucleotides PGA1_c27660 and PGA1_c27670 are separated by 59 nucleotides PGA1_c27670 and PGA1_c27680 are separated by 103 nucleotides PGA1_c27680 and PGA1_c27690 overlap by 4 nucleotides
PGA1_c27650: PGA1_c27650 - putative formate dehydrogenase H, at 2,880,967 to 2,883,942
_c27650
PGA1_c27660: PGA1_c27660 - hypothetical protein, at 2,884,049 to 2,884,240
_c27660
PGA1_c27670: PGA1_c27670 - cytoplasmic chaperon TorD-like protein, at 2,884,300 to 2,884,941
_c27670
PGA1_c27680: PGA1_c27680 - Protein of unknown function (DUF3306)., at 2,885,045 to 2,885,755
_c27680
PGA1_c27690: PGA1_c27690 - Protein of unknown function (DUF3305)., at 2,885,752 to 2,886,327
_c27690
Position (kb)
2884
2885 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2883.392 kb on + strand, within PGA1_c27650 at 2883.410 kb on + strand, within PGA1_c27650 at 2883.481 kb on + strand, within PGA1_c27650 at 2883.494 kb on - strand, within PGA1_c27650 at 2883.516 kb on + strand, within PGA1_c27650 at 2883.516 kb on + strand, within PGA1_c27650 at 2883.519 kb on + strand, within PGA1_c27650 at 2883.519 kb on + strand, within PGA1_c27650 at 2883.527 kb on - strand, within PGA1_c27650 at 2883.556 kb on - strand, within PGA1_c27650 at 2883.577 kb on + strand, within PGA1_c27650 at 2883.584 kb on + strand, within PGA1_c27650 at 2883.592 kb on - strand, within PGA1_c27650 at 2883.605 kb on + strand, within PGA1_c27650 at 2883.641 kb on + strand, within PGA1_c27650 at 2883.699 kb on + strand at 2883.699 kb on + strand at 2883.701 kb on + strand at 2883.756 kb on + strand at 2883.770 kb on + strand at 2883.831 kb on + strand at 2883.831 kb on + strand at 2883.839 kb on - strand at 2883.839 kb on - strand at 2883.839 kb on - strand at 2883.839 kb on - strand at 2883.858 kb on + strand at 2883.864 kb on - strand at 2883.866 kb on - strand at 2883.878 kb on + strand at 2883.886 kb on - strand at 2883.888 kb on + strand at 2883.888 kb on + strand at 2883.888 kb on + strand at 2883.896 kb on - strand at 2883.969 kb on - strand at 2883.969 kb on - strand at 2884.013 kb on + strand at 2884.029 kb on - strand at 2884.102 kb on + strand, within PGA1_c27660 at 2884.174 kb on + strand, within PGA1_c27660 at 2884.174 kb on + strand, within PGA1_c27660 at 2884.219 kb on - strand, within PGA1_c27660 at 2884.301 kb on - strand at 2884.311 kb on + strand at 2884.368 kb on - strand, within PGA1_c27670 at 2884.378 kb on + strand, within PGA1_c27670 at 2884.401 kb on - strand, within PGA1_c27670 at 2884.488 kb on + strand, within PGA1_c27670 at 2884.496 kb on - strand, within PGA1_c27670 at 2884.569 kb on - strand, within PGA1_c27670 at 2884.582 kb on - strand, within PGA1_c27670 at 2884.657 kb on + strand, within PGA1_c27670 at 2884.659 kb on - strand, within PGA1_c27670 at 2884.665 kb on - strand, within PGA1_c27670 at 2884.665 kb on - strand, within PGA1_c27670 at 2884.665 kb on - strand, within PGA1_c27670 at 2884.665 kb on - strand, within PGA1_c27670 at 2885.069 kb on + strand at 2885.126 kb on - strand, within PGA1_c27680 at 2885.154 kb on + strand, within PGA1_c27680 at 2885.197 kb on + strand, within PGA1_c27680 at 2885.348 kb on - strand, within PGA1_c27680 at 2885.385 kb on + strand, within PGA1_c27680 at 2885.385 kb on + strand, within PGA1_c27680 at 2885.385 kb on + strand, within PGA1_c27680 at 2885.412 kb on + strand, within PGA1_c27680 at 2885.412 kb on + strand, within PGA1_c27680 at 2885.412 kb on + strand, within PGA1_c27680 at 2885.412 kb on + strand, within PGA1_c27680 at 2885.420 kb on - strand, within PGA1_c27680 at 2885.420 kb on - strand, within PGA1_c27680 at 2885.420 kb on - strand, within PGA1_c27680 at 2885.534 kb on - strand, within PGA1_c27680 at 2885.753 kb on + strand at 2885.758 kb on - strand at 2885.758 kb on - strand at 2885.758 kb on - strand at 2885.761 kb on - strand at 2885.773 kb on + strand at 2885.787 kb on + strand at 2885.820 kb on + strand, within PGA1_c27690 at 2885.828 kb on - strand, within PGA1_c27690 at 2885.830 kb on + strand, within PGA1_c27690 at 2885.853 kb on + strand, within PGA1_c27690 at 2885.922 kb on - strand, within PGA1_c27690
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,883,392 + PGA1_c27650 0.81 +1.0 2,883,410 + PGA1_c27650 0.82 +1.0 2,883,481 + PGA1_c27650 0.84 +1.5 2,883,494 - PGA1_c27650 0.85 +1.2 2,883,516 + PGA1_c27650 0.86 +0.4 2,883,516 + PGA1_c27650 0.86 -0.3 2,883,519 + PGA1_c27650 0.86 +0.5 2,883,519 + PGA1_c27650 0.86 -1.4 2,883,527 - PGA1_c27650 0.86 +1.5 2,883,556 - PGA1_c27650 0.87 +0.3 2,883,577 + PGA1_c27650 0.88 +2.3 2,883,584 + PGA1_c27650 0.88 +0.4 2,883,592 - PGA1_c27650 0.88 -0.2 2,883,605 + PGA1_c27650 0.89 +2.4 2,883,641 + PGA1_c27650 0.90 +0.9 2,883,699 + +1.0 2,883,699 + -1.1 2,883,701 + +1.4 2,883,756 + -2.7 2,883,770 + +1.3 2,883,831 + -0.6 2,883,831 + -0.8 2,883,839 - +0.7 2,883,839 - +0.1 2,883,839 - -0.2 2,883,839 - +1.1 2,883,858 + -0.5 2,883,864 - -1.4 2,883,866 - +1.8 2,883,878 + +0.7 2,883,886 - -0.1 2,883,888 + +0.6 2,883,888 + +0.8 2,883,888 + +0.6 2,883,896 - +0.7 2,883,969 - -1.6 2,883,969 - +1.3 2,884,013 + -0.4 2,884,029 - +0.6 2,884,102 + PGA1_c27660 0.28 -1.5 2,884,174 + PGA1_c27660 0.65 -0.8 2,884,174 + PGA1_c27660 0.65 -0.9 2,884,219 - PGA1_c27660 0.89 +1.3 2,884,301 - +1.7 2,884,311 + -1.1 2,884,368 - PGA1_c27670 0.11 -0.5 2,884,378 + PGA1_c27670 0.12 +0.4 2,884,401 - PGA1_c27670 0.16 -0.7 2,884,488 + PGA1_c27670 0.29 -0.4 2,884,496 - PGA1_c27670 0.31 +0.1 2,884,569 - PGA1_c27670 0.42 +0.4 2,884,582 - PGA1_c27670 0.44 +1.7 2,884,657 + PGA1_c27670 0.56 +0.6 2,884,659 - PGA1_c27670 0.56 +1.4 2,884,665 - PGA1_c27670 0.57 +1.7 2,884,665 - PGA1_c27670 0.57 +1.5 2,884,665 - PGA1_c27670 0.57 +1.0 2,884,665 - PGA1_c27670 0.57 -0.6 2,885,069 + +0.3 2,885,126 - PGA1_c27680 0.11 +0.4 2,885,154 + PGA1_c27680 0.15 +2.0 2,885,197 + PGA1_c27680 0.21 +0.8 2,885,348 - PGA1_c27680 0.43 -1.6 2,885,385 + PGA1_c27680 0.48 -1.9 2,885,385 + PGA1_c27680 0.48 +0.6 2,885,385 + PGA1_c27680 0.48 -1.0 2,885,412 + PGA1_c27680 0.52 -2.1 2,885,412 + PGA1_c27680 0.52 +0.6 2,885,412 + PGA1_c27680 0.52 -0.2 2,885,412 + PGA1_c27680 0.52 -0.8 2,885,420 - PGA1_c27680 0.53 -1.0 2,885,420 - PGA1_c27680 0.53 -0.6 2,885,420 - PGA1_c27680 0.53 +0.2 2,885,534 - PGA1_c27680 0.69 -0.9 2,885,753 + -1.3 2,885,758 - +1.6 2,885,758 - +1.0 2,885,758 - -0.5 2,885,761 - -1.6 2,885,773 + -1.3 2,885,787 + +1.3 2,885,820 + PGA1_c27690 0.12 -1.2 2,885,828 - PGA1_c27690 0.13 +0.0 2,885,830 + PGA1_c27690 0.14 -1.7 2,885,853 + PGA1_c27690 0.18 +0.7 2,885,922 - PGA1_c27690 0.30 -0.3
Or see this region's nucleotide sequence