Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27670

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27650 and PGA1_c27660 are separated by 106 nucleotidesPGA1_c27660 and PGA1_c27670 are separated by 59 nucleotidesPGA1_c27670 and PGA1_c27680 are separated by 103 nucleotidesPGA1_c27680 and PGA1_c27690 overlap by 4 nucleotides PGA1_c27650: PGA1_c27650 - putative formate dehydrogenase H, at 2,880,967 to 2,883,942 _c27650 PGA1_c27660: PGA1_c27660 - hypothetical protein, at 2,884,049 to 2,884,240 _c27660 PGA1_c27670: PGA1_c27670 - cytoplasmic chaperon TorD-like protein, at 2,884,300 to 2,884,941 _c27670 PGA1_c27680: PGA1_c27680 - Protein of unknown function (DUF3306)., at 2,885,045 to 2,885,755 _c27680 PGA1_c27690: PGA1_c27690 - Protein of unknown function (DUF3305)., at 2,885,752 to 2,886,327 _c27690 Position (kb) 2884 2885Strain fitness (log2 ratio) -2 -1 0 1 2at 2883.392 kb on + strand, within PGA1_c27650at 2883.410 kb on + strand, within PGA1_c27650at 2883.481 kb on + strand, within PGA1_c27650at 2883.494 kb on - strand, within PGA1_c27650at 2883.516 kb on + strand, within PGA1_c27650at 2883.516 kb on + strand, within PGA1_c27650at 2883.519 kb on + strand, within PGA1_c27650at 2883.519 kb on + strand, within PGA1_c27650at 2883.527 kb on - strand, within PGA1_c27650at 2883.556 kb on - strand, within PGA1_c27650at 2883.577 kb on + strand, within PGA1_c27650at 2883.584 kb on + strand, within PGA1_c27650at 2883.592 kb on - strand, within PGA1_c27650at 2883.605 kb on + strand, within PGA1_c27650at 2883.641 kb on + strand, within PGA1_c27650at 2883.699 kb on + strandat 2883.699 kb on + strandat 2883.701 kb on + strandat 2883.756 kb on + strandat 2883.770 kb on + strandat 2883.831 kb on + strandat 2883.831 kb on + strandat 2883.839 kb on - strandat 2883.839 kb on - strandat 2883.839 kb on - strandat 2883.839 kb on - strandat 2883.858 kb on + strandat 2883.864 kb on - strandat 2883.866 kb on - strandat 2883.878 kb on + strandat 2883.886 kb on - strandat 2883.888 kb on + strandat 2883.888 kb on + strandat 2883.888 kb on + strandat 2883.896 kb on - strandat 2883.969 kb on - strandat 2883.969 kb on - strandat 2884.013 kb on + strandat 2884.029 kb on - strandat 2884.102 kb on + strand, within PGA1_c27660at 2884.174 kb on + strand, within PGA1_c27660at 2884.174 kb on + strand, within PGA1_c27660at 2884.219 kb on - strand, within PGA1_c27660at 2884.301 kb on - strandat 2884.311 kb on + strandat 2884.368 kb on - strand, within PGA1_c27670at 2884.378 kb on + strand, within PGA1_c27670at 2884.401 kb on - strand, within PGA1_c27670at 2884.488 kb on + strand, within PGA1_c27670at 2884.496 kb on - strand, within PGA1_c27670at 2884.569 kb on - strand, within PGA1_c27670at 2884.582 kb on - strand, within PGA1_c27670at 2884.657 kb on + strand, within PGA1_c27670at 2884.659 kb on - strand, within PGA1_c27670at 2884.665 kb on - strand, within PGA1_c27670at 2884.665 kb on - strand, within PGA1_c27670at 2884.665 kb on - strand, within PGA1_c27670at 2884.665 kb on - strand, within PGA1_c27670at 2885.069 kb on + strandat 2885.126 kb on - strand, within PGA1_c27680at 2885.154 kb on + strand, within PGA1_c27680at 2885.197 kb on + strand, within PGA1_c27680at 2885.348 kb on - strand, within PGA1_c27680at 2885.385 kb on + strand, within PGA1_c27680at 2885.385 kb on + strand, within PGA1_c27680at 2885.385 kb on + strand, within PGA1_c27680at 2885.412 kb on + strand, within PGA1_c27680at 2885.412 kb on + strand, within PGA1_c27680at 2885.412 kb on + strand, within PGA1_c27680at 2885.412 kb on + strand, within PGA1_c27680at 2885.420 kb on - strand, within PGA1_c27680at 2885.420 kb on - strand, within PGA1_c27680at 2885.420 kb on - strand, within PGA1_c27680at 2885.534 kb on - strand, within PGA1_c27680at 2885.753 kb on + strandat 2885.758 kb on - strandat 2885.758 kb on - strandat 2885.758 kb on - strandat 2885.761 kb on - strandat 2885.773 kb on + strandat 2885.787 kb on + strandat 2885.820 kb on + strand, within PGA1_c27690at 2885.828 kb on - strand, within PGA1_c27690at 2885.830 kb on + strand, within PGA1_c27690at 2885.853 kb on + strand, within PGA1_c27690at 2885.922 kb on - strand, within PGA1_c27690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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2,883,392 + PGA1_c27650 0.81 +1.0
2,883,410 + PGA1_c27650 0.82 +1.0
2,883,481 + PGA1_c27650 0.84 +1.5
2,883,494 - PGA1_c27650 0.85 +1.2
2,883,516 + PGA1_c27650 0.86 +0.4
2,883,516 + PGA1_c27650 0.86 -0.3
2,883,519 + PGA1_c27650 0.86 +0.5
2,883,519 + PGA1_c27650 0.86 -1.4
2,883,527 - PGA1_c27650 0.86 +1.5
2,883,556 - PGA1_c27650 0.87 +0.3
2,883,577 + PGA1_c27650 0.88 +2.3
2,883,584 + PGA1_c27650 0.88 +0.4
2,883,592 - PGA1_c27650 0.88 -0.2
2,883,605 + PGA1_c27650 0.89 +2.4
2,883,641 + PGA1_c27650 0.90 +0.9
2,883,699 + +1.0
2,883,699 + -1.1
2,883,701 + +1.4
2,883,756 + -2.7
2,883,770 + +1.3
2,883,831 + -0.6
2,883,831 + -0.8
2,883,839 - +0.7
2,883,839 - +0.1
2,883,839 - -0.2
2,883,839 - +1.1
2,883,858 + -0.5
2,883,864 - -1.4
2,883,866 - +1.8
2,883,878 + +0.7
2,883,886 - -0.1
2,883,888 + +0.6
2,883,888 + +0.8
2,883,888 + +0.6
2,883,896 - +0.7
2,883,969 - -1.6
2,883,969 - +1.3
2,884,013 + -0.4
2,884,029 - +0.6
2,884,102 + PGA1_c27660 0.28 -1.5
2,884,174 + PGA1_c27660 0.65 -0.8
2,884,174 + PGA1_c27660 0.65 -0.9
2,884,219 - PGA1_c27660 0.89 +1.3
2,884,301 - +1.7
2,884,311 + -1.1
2,884,368 - PGA1_c27670 0.11 -0.5
2,884,378 + PGA1_c27670 0.12 +0.4
2,884,401 - PGA1_c27670 0.16 -0.7
2,884,488 + PGA1_c27670 0.29 -0.4
2,884,496 - PGA1_c27670 0.31 +0.1
2,884,569 - PGA1_c27670 0.42 +0.4
2,884,582 - PGA1_c27670 0.44 +1.7
2,884,657 + PGA1_c27670 0.56 +0.6
2,884,659 - PGA1_c27670 0.56 +1.4
2,884,665 - PGA1_c27670 0.57 +1.7
2,884,665 - PGA1_c27670 0.57 +1.5
2,884,665 - PGA1_c27670 0.57 +1.0
2,884,665 - PGA1_c27670 0.57 -0.6
2,885,069 + +0.3
2,885,126 - PGA1_c27680 0.11 +0.4
2,885,154 + PGA1_c27680 0.15 +2.0
2,885,197 + PGA1_c27680 0.21 +0.8
2,885,348 - PGA1_c27680 0.43 -1.6
2,885,385 + PGA1_c27680 0.48 -1.9
2,885,385 + PGA1_c27680 0.48 +0.6
2,885,385 + PGA1_c27680 0.48 -1.0
2,885,412 + PGA1_c27680 0.52 -2.1
2,885,412 + PGA1_c27680 0.52 +0.6
2,885,412 + PGA1_c27680 0.52 -0.2
2,885,412 + PGA1_c27680 0.52 -0.8
2,885,420 - PGA1_c27680 0.53 -1.0
2,885,420 - PGA1_c27680 0.53 -0.6
2,885,420 - PGA1_c27680 0.53 +0.2
2,885,534 - PGA1_c27680 0.69 -0.9
2,885,753 + -1.3
2,885,758 - +1.6
2,885,758 - +1.0
2,885,758 - -0.5
2,885,761 - -1.6
2,885,773 + -1.3
2,885,787 + +1.3
2,885,820 + PGA1_c27690 0.12 -1.2
2,885,828 - PGA1_c27690 0.13 +0.0
2,885,830 + PGA1_c27690 0.14 -1.7
2,885,853 + PGA1_c27690 0.18 +0.7
2,885,922 - PGA1_c27690 0.30 -0.3

Or see this region's nucleotide sequence