Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2655 and HP15_2656 are separated by 28 nucleotides HP15_2656 and HP15_2657 are separated by 90 nucleotides HP15_2657 and HP15_2658 are separated by 5 nucleotides
HP15_2655: HP15_2655 - methylmalonate-semialdehyde dehydrogenase, at 2,803,984 to 2,805,495
_2655
HP15_2656: HP15_2656 - glucose-methanol-choline oxidoreductase, at 2,805,524 to 2,807,194
_2656
HP15_2657: HP15_2657 - threonine efflux protein, at 2,807,285 to 2,807,905
_2657
HP15_2658: HP15_2658 - nucleoside-diphosphate-sugar epimerase, at 2,807,911 to 2,808,582
_2658
Position (kb)
2805
2806
2807
2808 Strain fitness (log2 ratio)
-1
0
1 at 2804.775 kb on + strand, within HP15_2655 at 2804.911 kb on - strand, within HP15_2655 at 2804.974 kb on + strand, within HP15_2655 at 2804.993 kb on + strand, within HP15_2655 at 2805.017 kb on + strand, within HP15_2655 at 2805.017 kb on + strand, within HP15_2655 at 2805.052 kb on + strand, within HP15_2655 at 2805.160 kb on + strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.299 kb on - strand, within HP15_2655 at 2805.446 kb on - strand at 2805.672 kb on + strand at 2805.753 kb on + strand, within HP15_2656 at 2805.847 kb on + strand, within HP15_2656 at 2805.861 kb on - strand, within HP15_2656 at 2805.985 kb on - strand, within HP15_2656 at 2806.128 kb on + strand, within HP15_2656 at 2806.208 kb on - strand, within HP15_2656 at 2806.507 kb on + strand, within HP15_2656 at 2806.594 kb on - strand, within HP15_2656 at 2806.615 kb on + strand, within HP15_2656 at 2806.677 kb on + strand, within HP15_2656 at 2806.677 kb on + strand, within HP15_2656 at 2806.677 kb on + strand, within HP15_2656 at 2806.678 kb on - strand, within HP15_2656 at 2806.685 kb on - strand, within HP15_2656 at 2807.041 kb on + strand at 2807.144 kb on + strand at 2807.144 kb on + strand at 2807.280 kb on - strand at 2808.016 kb on - strand, within HP15_2658 at 2808.102 kb on + strand, within HP15_2658 at 2808.108 kb on - strand, within HP15_2658 at 2808.139 kb on - strand, within HP15_2658 at 2808.144 kb on - strand, within HP15_2658 at 2808.170 kb on - strand, within HP15_2658
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,804,775 + HP15_2655 0.52 +0.2 2,804,911 - HP15_2655 0.61 +0.6 2,804,974 + HP15_2655 0.65 -1.1 2,804,993 + HP15_2655 0.67 +0.3 2,805,017 + HP15_2655 0.68 +0.7 2,805,017 + HP15_2655 0.68 +0.9 2,805,052 + HP15_2655 0.71 -0.2 2,805,160 + HP15_2655 0.78 +0.7 2,805,168 - HP15_2655 0.78 -0.8 2,805,168 - HP15_2655 0.78 +0.1 2,805,168 - HP15_2655 0.78 -0.9 2,805,168 - HP15_2655 0.78 -0.7 2,805,168 - HP15_2655 0.78 -0.1 2,805,299 - HP15_2655 0.87 +0.1 2,805,446 - +0.6 2,805,672 + -0.1 2,805,753 + HP15_2656 0.14 -1.0 2,805,847 + HP15_2656 0.19 -1.0 2,805,861 - HP15_2656 0.20 -0.3 2,805,985 - HP15_2656 0.28 -0.2 2,806,128 + HP15_2656 0.36 -0.3 2,806,208 - HP15_2656 0.41 +0.0 2,806,507 + HP15_2656 0.59 +0.3 2,806,594 - HP15_2656 0.64 +1.0 2,806,615 + HP15_2656 0.65 +0.5 2,806,677 + HP15_2656 0.69 -1.1 2,806,677 + HP15_2656 0.69 -0.1 2,806,677 + HP15_2656 0.69 -1.3 2,806,678 - HP15_2656 0.69 -0.2 2,806,685 - HP15_2656 0.69 -0.3 2,807,041 + -0.0 2,807,144 + +0.3 2,807,144 + +1.2 2,807,280 - -0.2 2,808,016 - HP15_2658 0.16 -0.4 2,808,102 + HP15_2658 0.28 -0.1 2,808,108 - HP15_2658 0.29 +0.2 2,808,139 - HP15_2658 0.34 +0.2 2,808,144 - HP15_2658 0.35 -0.3 2,808,170 - HP15_2658 0.39 -0.6
Or see this region's nucleotide sequence