Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26620 and PGA1_c26630 overlap by 1 nucleotides PGA1_c26630 and PGA1_c26640 are separated by 42 nucleotides PGA1_c26640 and PGA1_c26650 are separated by 113 nucleotides
PGA1_c26620: PGA1_c26620 - putative molybdopterin biosynthesis protein MoeB, at 2,777,368 to 2,778,504
_c26620
PGA1_c26630: PGA1_c26630 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 2,778,504 to 2,778,959
_c26630
PGA1_c26640: PGA1_c26640 - coenzyme A biosynthesis bifunctional protein CoaBC, at 2,779,002 to 2,780,204
_c26640
PGA1_c26650: PGA1_c26650 - Uncharacterized iron-regulated protein, at 2,780,318 to 2,781,265
_c26650
Position (kb)
2779
2780
2781 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2778.036 kb on + strand, within PGA1_c26620 at 2778.044 kb on - strand, within PGA1_c26620 at 2778.044 kb on - strand, within PGA1_c26620 at 2778.059 kb on - strand, within PGA1_c26620 at 2778.138 kb on + strand, within PGA1_c26620 at 2778.141 kb on - strand, within PGA1_c26620 at 2778.226 kb on - strand, within PGA1_c26620 at 2778.239 kb on - strand, within PGA1_c26620 at 2778.265 kb on - strand, within PGA1_c26620 at 2778.265 kb on - strand, within PGA1_c26620 at 2778.413 kb on + strand at 2778.449 kb on - strand at 2778.472 kb on + strand at 2778.510 kb on - strand at 2778.520 kb on - strand at 2778.598 kb on + strand, within PGA1_c26630 at 2778.606 kb on - strand, within PGA1_c26630 at 2778.606 kb on - strand, within PGA1_c26630 at 2778.662 kb on + strand, within PGA1_c26630 at 2778.775 kb on - strand, within PGA1_c26630 at 2778.775 kb on - strand, within PGA1_c26630 at 2778.775 kb on - strand, within PGA1_c26630 at 2778.810 kb on - strand, within PGA1_c26630 at 2778.833 kb on + strand, within PGA1_c26630 at 2778.835 kb on - strand, within PGA1_c26630 at 2778.869 kb on + strand, within PGA1_c26630 at 2778.911 kb on + strand, within PGA1_c26630 at 2778.911 kb on + strand, within PGA1_c26630 at 2778.932 kb on + strand at 2778.966 kb on + strand at 2778.966 kb on + strand at 2778.974 kb on - strand at 2779.008 kb on - strand at 2780.344 kb on - strand at 2780.375 kb on + strand at 2780.393 kb on - strand at 2780.398 kb on - strand at 2780.400 kb on + strand at 2780.408 kb on - strand at 2780.488 kb on - strand, within PGA1_c26650 at 2780.488 kb on - strand, within PGA1_c26650 at 2780.557 kb on - strand, within PGA1_c26650 at 2780.557 kb on - strand, within PGA1_c26650 at 2780.560 kb on + strand, within PGA1_c26650 at 2780.707 kb on + strand, within PGA1_c26650 at 2780.755 kb on - strand, within PGA1_c26650 at 2780.755 kb on - strand, within PGA1_c26650 at 2780.790 kb on + strand, within PGA1_c26650 at 2780.790 kb on + strand, within PGA1_c26650 at 2780.790 kb on + strand, within PGA1_c26650 at 2780.790 kb on + strand, within PGA1_c26650 at 2780.798 kb on - strand, within PGA1_c26650 at 2780.865 kb on + strand, within PGA1_c26650 at 2780.898 kb on + strand, within PGA1_c26650 at 2780.916 kb on - strand, within PGA1_c26650 at 2780.932 kb on + strand, within PGA1_c26650 at 2780.940 kb on - strand, within PGA1_c26650 at 2780.987 kb on - strand, within PGA1_c26650 at 2780.999 kb on - strand, within PGA1_c26650 at 2781.028 kb on - strand, within PGA1_c26650 at 2781.046 kb on - strand, within PGA1_c26650 at 2781.059 kb on - strand, within PGA1_c26650 at 2781.059 kb on - strand, within PGA1_c26650 at 2781.165 kb on + strand, within PGA1_c26650 at 2781.170 kb on + strand, within PGA1_c26650 at 2781.175 kb on + strand at 2781.175 kb on + strand at 2781.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,778,036 + PGA1_c26620 0.59 +1.9 2,778,044 - PGA1_c26620 0.59 +1.4 2,778,044 - PGA1_c26620 0.59 +1.0 2,778,059 - PGA1_c26620 0.61 -0.6 2,778,138 + PGA1_c26620 0.68 +0.3 2,778,141 - PGA1_c26620 0.68 +0.2 2,778,226 - PGA1_c26620 0.75 +0.7 2,778,239 - PGA1_c26620 0.77 +0.3 2,778,265 - PGA1_c26620 0.79 +0.5 2,778,265 - PGA1_c26620 0.79 +1.0 2,778,413 + +1.9 2,778,449 - -0.4 2,778,472 + +1.7 2,778,510 - +1.6 2,778,520 - +1.2 2,778,598 + PGA1_c26630 0.21 +0.7 2,778,606 - PGA1_c26630 0.22 -2.0 2,778,606 - PGA1_c26630 0.22 -0.4 2,778,662 + PGA1_c26630 0.35 +0.4 2,778,775 - PGA1_c26630 0.59 +1.9 2,778,775 - PGA1_c26630 0.59 +0.5 2,778,775 - PGA1_c26630 0.59 +0.2 2,778,810 - PGA1_c26630 0.67 +1.3 2,778,833 + PGA1_c26630 0.72 +1.9 2,778,835 - PGA1_c26630 0.73 +1.6 2,778,869 + PGA1_c26630 0.80 -0.1 2,778,911 + PGA1_c26630 0.89 +0.3 2,778,911 + PGA1_c26630 0.89 +2.7 2,778,932 + +1.5 2,778,966 + +0.0 2,778,966 + +0.3 2,778,974 - -1.4 2,779,008 - -0.5 2,780,344 - +2.9 2,780,375 + +0.1 2,780,393 - +1.1 2,780,398 - -0.3 2,780,400 + +1.2 2,780,408 - +1.2 2,780,488 - PGA1_c26650 0.18 +0.9 2,780,488 - PGA1_c26650 0.18 -2.0 2,780,557 - PGA1_c26650 0.25 -1.3 2,780,557 - PGA1_c26650 0.25 -0.7 2,780,560 + PGA1_c26650 0.26 -0.7 2,780,707 + PGA1_c26650 0.41 -1.3 2,780,755 - PGA1_c26650 0.46 +0.5 2,780,755 - PGA1_c26650 0.46 -1.0 2,780,790 + PGA1_c26650 0.50 -0.5 2,780,790 + PGA1_c26650 0.50 -1.1 2,780,790 + PGA1_c26650 0.50 -0.7 2,780,790 + PGA1_c26650 0.50 -0.5 2,780,798 - PGA1_c26650 0.51 -0.8 2,780,865 + PGA1_c26650 0.58 -0.9 2,780,898 + PGA1_c26650 0.61 -0.4 2,780,916 - PGA1_c26650 0.63 -0.9 2,780,932 + PGA1_c26650 0.65 -1.6 2,780,940 - PGA1_c26650 0.66 +0.7 2,780,987 - PGA1_c26650 0.71 +0.2 2,780,999 - PGA1_c26650 0.72 -0.1 2,781,028 - PGA1_c26650 0.75 +1.2 2,781,046 - PGA1_c26650 0.77 +3.2 2,781,059 - PGA1_c26650 0.78 -0.7 2,781,059 - PGA1_c26650 0.78 -0.7 2,781,165 + PGA1_c26650 0.89 -0.1 2,781,170 + PGA1_c26650 0.90 -2.1 2,781,175 + +1.2 2,781,175 + -1.3 2,781,185 - -1.9
Or see this region's nucleotide sequence