Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2650

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2649 and Psest_2650 are separated by 16 nucleotidesPsest_2650 and Psest_2651 are separated by 144 nucleotides Psest_2649: Psest_2649 - Predicted permease, DMT superfamily, at 2,830,678 to 2,831,517 _2649 Psest_2650: Psest_2650 - hypothetical protein, at 2,831,534 to 2,832,052 _2650 Psest_2651: Psest_2651 - DNA topoisomerase I, bacterial, at 2,832,197 to 2,834,800 _2651 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2830.628 kb on + strandat 2830.628 kb on + strandat 2830.628 kb on + strandat 2830.629 kb on - strandat 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.924 kb on + strand, within Psest_2649at 2830.925 kb on - strand, within Psest_2649at 2830.925 kb on - strand, within Psest_2649at 2830.925 kb on - strand, within Psest_2649at 2830.925 kb on - strand, within Psest_2649at 2830.925 kb on - strand, within Psest_2649at 2830.925 kb on - strand, within Psest_2649at 2830.925 kb on - strand, within Psest_2649at 2830.925 kb on - strand, within Psest_2649at 2830.926 kb on + strand, within Psest_2649at 2830.926 kb on + strand, within Psest_2649at 2830.926 kb on + strand, within Psest_2649at 2830.926 kb on + strand, within Psest_2649at 2830.926 kb on + strand, within Psest_2649at 2830.927 kb on - strand, within Psest_2649at 2830.927 kb on - strand, within Psest_2649at 2831.149 kb on + strand, within Psest_2649at 2831.149 kb on + strand, within Psest_2649at 2831.149 kb on + strand, within Psest_2649at 2831.149 kb on + strand, within Psest_2649at 2831.149 kb on + strand, within Psest_2649at 2831.149 kb on + strand, within Psest_2649at 2831.150 kb on - strand, within Psest_2649at 2831.150 kb on - strand, within Psest_2649at 2831.284 kb on + strand, within Psest_2649at 2831.284 kb on + strand, within Psest_2649at 2831.336 kb on - strand, within Psest_2649at 2831.361 kb on + strand, within Psest_2649at 2831.363 kb on + strand, within Psest_2649at 2831.364 kb on - strand, within Psest_2649at 2831.364 kb on - strand, within Psest_2649at 2831.420 kb on + strand, within Psest_2649at 2831.565 kb on - strandat 2831.565 kb on - strandat 2831.718 kb on + strand, within Psest_2650at 2831.718 kb on + strand, within Psest_2650at 2831.719 kb on - strand, within Psest_2650at 2831.719 kb on - strand, within Psest_2650at 2831.726 kb on - strand, within Psest_2650at 2832.036 kb on + strandat 2832.036 kb on + strandat 2832.282 kb on + strandat 2832.367 kb on - strandat 2832.489 kb on + strand, within Psest_2651at 2832.489 kb on + strand, within Psest_2651at 2832.489 kb on + strand, within Psest_2651at 2832.489 kb on + strand, within Psest_2651at 2832.489 kb on + strand, within Psest_2651at 2832.489 kb on + strand, within Psest_2651at 2832.489 kb on + strand, within Psest_2651at 2832.490 kb on - strand, within Psest_2651at 2832.490 kb on - strand, within Psest_2651at 2832.490 kb on - strand, within Psest_2651at 2832.490 kb on - strand, within Psest_2651at 2832.490 kb on - strand, within Psest_2651at 2832.490 kb on - strand, within Psest_2651at 2832.490 kb on - strand, within Psest_2651at 2832.490 kb on - strand, within Psest_2651

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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2,830,628 + -0.6
2,830,628 + +0.1
2,830,628 + +0.7
2,830,629 - -0.3
2,830,924 + Psest_2649 0.29 -0.6
2,830,924 + Psest_2649 0.29 +0.8
2,830,924 + Psest_2649 0.29 +0.3
2,830,924 + Psest_2649 0.29 +1.4
2,830,924 + Psest_2649 0.29 +1.0
2,830,924 + Psest_2649 0.29 +1.1
2,830,924 + Psest_2649 0.29 +0.1
2,830,924 + Psest_2649 0.29 -0.4
2,830,924 + Psest_2649 0.29 -0.7
2,830,924 + Psest_2649 0.29 +0.1
2,830,924 + Psest_2649 0.29 +1.0
2,830,924 + Psest_2649 0.29 -0.0
2,830,925 - Psest_2649 0.29 -0.0
2,830,925 - Psest_2649 0.29 +0.4
2,830,925 - Psest_2649 0.29 +1.0
2,830,925 - Psest_2649 0.29 -1.0
2,830,925 - Psest_2649 0.29 -0.9
2,830,925 - Psest_2649 0.29 -0.0
2,830,925 - Psest_2649 0.29 +1.0
2,830,925 - Psest_2649 0.29 +0.7
2,830,926 + Psest_2649 0.30 -0.4
2,830,926 + Psest_2649 0.30 +0.6
2,830,926 + Psest_2649 0.30 -0.3
2,830,926 + Psest_2649 0.30 -0.2
2,830,926 + Psest_2649 0.30 +0.5
2,830,927 - Psest_2649 0.30 +0.6
2,830,927 - Psest_2649 0.30 -1.4
2,831,149 + Psest_2649 0.56 -0.4
2,831,149 + Psest_2649 0.56 +0.4
2,831,149 + Psest_2649 0.56 +0.2
2,831,149 + Psest_2649 0.56 +0.6
2,831,149 + Psest_2649 0.56 +1.5
2,831,149 + Psest_2649 0.56 -0.2
2,831,150 - Psest_2649 0.56 +0.4
2,831,150 - Psest_2649 0.56 -0.1
2,831,284 + Psest_2649 0.72 +0.2
2,831,284 + Psest_2649 0.72 +0.5
2,831,336 - Psest_2649 0.78 +0.7
2,831,361 + Psest_2649 0.81 -0.2
2,831,363 + Psest_2649 0.82 -0.0
2,831,364 - Psest_2649 0.82 -1.9
2,831,364 - Psest_2649 0.82 -0.5
2,831,420 + Psest_2649 0.88 +1.1
2,831,565 - -2.2
2,831,565 - -1.6
2,831,718 + Psest_2650 0.35 -3.5
2,831,718 + Psest_2650 0.35 -2.6
2,831,719 - Psest_2650 0.36 -3.6
2,831,719 - Psest_2650 0.36 -2.0
2,831,726 - Psest_2650 0.37 -3.3
2,832,036 + -1.4
2,832,036 + -1.0
2,832,282 + +2.4
2,832,367 - -0.0
2,832,489 + Psest_2651 0.11 +1.7
2,832,489 + Psest_2651 0.11 +1.0
2,832,489 + Psest_2651 0.11 +1.2
2,832,489 + Psest_2651 0.11 +0.6
2,832,489 + Psest_2651 0.11 +1.6
2,832,489 + Psest_2651 0.11 -0.6
2,832,489 + Psest_2651 0.11 +1.2
2,832,490 - Psest_2651 0.11 +1.9
2,832,490 - Psest_2651 0.11 +1.5
2,832,490 - Psest_2651 0.11 +0.8
2,832,490 - Psest_2651 0.11 -0.5
2,832,490 - Psest_2651 0.11 +2.5
2,832,490 - Psest_2651 0.11 +1.0
2,832,490 - Psest_2651 0.11 +2.3
2,832,490 - Psest_2651 0.11 +1.2

Or see this region's nucleotide sequence