Strain Fitness in Marinobacter adhaerens HP15 around HP15_2513

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2511 and HP15_2512 are separated by 15 nucleotidesHP15_2512 and HP15_2513 are separated by 7 nucleotidesHP15_2513 and HP15_2514 are separated by 90 nucleotides HP15_2511: HP15_2511 - phosphatidylserine decarboxylase proenzyme, at 2,651,112 to 2,651,966 _2511 HP15_2512: HP15_2512 - tRNA synthetase, class II (D, K and N), at 2,651,982 to 2,652,950 _2512 HP15_2513: HP15_2513 - translation elongation factor P, at 2,652,958 to 2,653,488 _2513 HP15_2514: HP15_2514 - lysine 2,3-aminomutase YodO family protein, at 2,653,579 to 2,654,619 _2514 Position (kb) 2652 2653 2654Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2652.003 kb on + strandat 2652.211 kb on + strand, within HP15_2512at 2652.225 kb on - strand, within HP15_2512at 2652.345 kb on - strand, within HP15_2512at 2652.345 kb on - strand, within HP15_2512at 2652.437 kb on + strand, within HP15_2512at 2652.569 kb on + strand, within HP15_2512at 2652.609 kb on - strand, within HP15_2512at 2652.676 kb on - strand, within HP15_2512at 2652.735 kb on + strand, within HP15_2512at 2652.824 kb on + strand, within HP15_2512at 2652.953 kb on - strandat 2653.661 kb on + strandat 2653.737 kb on - strand, within HP15_2514at 2653.793 kb on - strand, within HP15_2514at 2654.050 kb on - strand, within HP15_2514at 2654.085 kb on - strand, within HP15_2514at 2654.349 kb on + strand, within HP15_2514

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,652,003 + -3.5
2,652,211 + HP15_2512 0.24 -3.3
2,652,225 - HP15_2512 0.25 +0.9
2,652,345 - HP15_2512 0.37 -2.8
2,652,345 - HP15_2512 0.37 -1.1
2,652,437 + HP15_2512 0.47 -1.7
2,652,569 + HP15_2512 0.61 -1.1
2,652,609 - HP15_2512 0.65 -1.7
2,652,676 - HP15_2512 0.72 -2.3
2,652,735 + HP15_2512 0.78 -1.1
2,652,824 + HP15_2512 0.87 -2.1
2,652,953 - -1.2
2,653,661 + -3.3
2,653,737 - HP15_2514 0.15 -1.5
2,653,793 - HP15_2514 0.21 -3.4
2,654,050 - HP15_2514 0.45 +0.9
2,654,085 - HP15_2514 0.49 -4.3
2,654,349 + HP15_2514 0.74 -4.4

Or see this region's nucleotide sequence