Strain Fitness in Marinobacter adhaerens HP15 around HP15_2458

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2457 and HP15_2458 are separated by 35 nucleotidesHP15_2458 and HP15_2459 are separated by 196 nucleotides HP15_2457: HP15_2457 - glutamyl-tRNA (Gln) amidotransferase A subunit, at 2,595,468 to 2,596,925 _2457 HP15_2458: HP15_2458 - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 2,596,961 to 2,598,412 _2458 HP15_2459: HP15_2459 - MiaB-like tRNA modifying enzyme YliG, at 2,598,609 to 2,599,955 _2459 Position (kb) 2596 2597 2598 2599Strain fitness (log2 ratio) -1 0 1at 2596.926 kb on + strandat 2596.941 kb on + strandat 2598.446 kb on + strandat 2598.454 kb on - strandat 2598.454 kb on - strandat 2598.571 kb on + strandat 2598.615 kb on - strandat 2598.946 kb on - strand, within HP15_2459at 2599.031 kb on + strand, within HP15_2459at 2599.048 kb on + strand, within HP15_2459at 2599.048 kb on + strand, within HP15_2459at 2599.051 kb on - strand, within HP15_2459at 2599.100 kb on - strand, within HP15_2459at 2599.205 kb on + strand, within HP15_2459at 2599.371 kb on - strand, within HP15_2459at 2599.395 kb on + strand, within HP15_2459

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,596,926 + +0.1
2,596,941 + -1.0
2,598,446 + -1.1
2,598,454 - +0.2
2,598,454 - +0.3
2,598,571 + +1.2
2,598,615 - +0.0
2,598,946 - HP15_2459 0.25 -0.1
2,599,031 + HP15_2459 0.31 +0.3
2,599,048 + HP15_2459 0.33 -0.3
2,599,048 + HP15_2459 0.33 -0.3
2,599,051 - HP15_2459 0.33 +0.2
2,599,100 - HP15_2459 0.36 +0.6
2,599,205 + HP15_2459 0.44 -0.6
2,599,371 - HP15_2459 0.57 -0.4
2,599,395 + HP15_2459 0.58 -0.1

Or see this region's nucleotide sequence