Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02610 and PGA1_c02620 overlap by 1 nucleotides PGA1_c02620 and PGA1_c02630 are separated by 43 nucleotides PGA1_c02630 and PGA1_c02640 are separated by 45 nucleotides
PGA1_c02610: PGA1_c02610 - putative high-affinity branched-chain amino acid transport ATP-binding protein LivG, at 245,116 to 245,883
_c02610
PGA1_c02620: PGA1_c02620 - high-affinity branched-chain amino acid transport ATP-binding protein LivF, at 245,883 to 246,656
_c02620
PGA1_c02630: PGA1_c02630 - putative long-chain-fatty-acid-CoA ligase, at 246,700 to 248,637
_c02630
PGA1_c02640: PGA1_c02640 - putative amino acid binding protein, at 248,683 to 249,843
_c02640
Position (kb) 246
247
248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 245.737 kb on + strand, within PGA1_c02610 at 245.760 kb on - strand, within PGA1_c02610 at 245.790 kb on + strand, within PGA1_c02610 at 245.835 kb on + strand at 245.835 kb on + strand at 245.835 kb on + strand at 245.843 kb on - strand at 245.882 kb on + strand at 245.886 kb on + strand at 245.902 kb on - strand at 245.937 kb on - strand at 245.937 kb on - strand at 245.964 kb on + strand, within PGA1_c02620 at 245.964 kb on + strand, within PGA1_c02620 at 245.964 kb on + strand, within PGA1_c02620 at 245.972 kb on - strand, within PGA1_c02620 at 245.978 kb on + strand, within PGA1_c02620 at 246.013 kb on + strand, within PGA1_c02620 at 246.033 kb on + strand, within PGA1_c02620 at 246.086 kb on + strand, within PGA1_c02620 at 246.107 kb on - strand, within PGA1_c02620 at 246.137 kb on - strand, within PGA1_c02620 at 246.169 kb on + strand, within PGA1_c02620 at 246.172 kb on - strand, within PGA1_c02620 at 246.181 kb on + strand, within PGA1_c02620 at 246.181 kb on + strand, within PGA1_c02620 at 246.195 kb on + strand, within PGA1_c02620 at 246.203 kb on - strand, within PGA1_c02620 at 246.229 kb on - strand, within PGA1_c02620 at 246.229 kb on - strand, within PGA1_c02620 at 246.295 kb on - strand, within PGA1_c02620 at 246.379 kb on + strand, within PGA1_c02620 at 246.380 kb on - strand, within PGA1_c02620 at 246.381 kb on - strand, within PGA1_c02620 at 246.387 kb on - strand, within PGA1_c02620 at 246.387 kb on - strand, within PGA1_c02620 at 246.447 kb on + strand, within PGA1_c02620 at 246.465 kb on + strand, within PGA1_c02620 at 246.497 kb on + strand, within PGA1_c02620 at 246.511 kb on - strand, within PGA1_c02620 at 246.609 kb on + strand at 246.609 kb on + strand at 246.609 kb on + strand at 246.617 kb on - strand at 246.617 kb on - strand at 246.617 kb on - strand at 246.655 kb on + strand at 246.663 kb on - strand at 246.699 kb on + strand at 246.710 kb on + strand at 246.712 kb on - strand at 246.718 kb on - strand at 246.718 kb on - strand at 246.727 kb on - strand at 246.751 kb on - strand at 246.774 kb on + strand at 246.782 kb on - strand at 246.836 kb on - strand at 246.861 kb on + strand at 246.884 kb on + strand at 246.892 kb on - strand at 246.953 kb on + strand, within PGA1_c02630 at 246.977 kb on + strand, within PGA1_c02630 at 246.980 kb on - strand, within PGA1_c02630 at 246.992 kb on + strand, within PGA1_c02630 at 247.018 kb on + strand, within PGA1_c02630 at 247.058 kb on - strand, within PGA1_c02630 at 247.098 kb on + strand, within PGA1_c02630 at 247.098 kb on + strand, within PGA1_c02630 at 247.098 kb on + strand, within PGA1_c02630 at 247.098 kb on + strand, within PGA1_c02630 at 247.106 kb on - strand, within PGA1_c02630 at 247.106 kb on - strand, within PGA1_c02630 at 247.106 kb on - strand, within PGA1_c02630 at 247.193 kb on + strand, within PGA1_c02630 at 247.216 kb on + strand, within PGA1_c02630 at 247.222 kb on + strand, within PGA1_c02630 at 247.230 kb on - strand, within PGA1_c02630 at 247.232 kb on + strand, within PGA1_c02630 at 247.240 kb on + strand, within PGA1_c02630 at 247.255 kb on + strand, within PGA1_c02630 at 247.307 kb on - strand, within PGA1_c02630 at 247.307 kb on - strand, within PGA1_c02630 at 247.342 kb on - strand, within PGA1_c02630 at 247.342 kb on - strand, within PGA1_c02630 at 247.342 kb on - strand, within PGA1_c02630 at 247.342 kb on - strand, within PGA1_c02630 at 247.365 kb on + strand, within PGA1_c02630 at 247.374 kb on + strand, within PGA1_c02630 at 247.382 kb on - strand, within PGA1_c02630 at 247.392 kb on + strand, within PGA1_c02630 at 247.392 kb on + strand, within PGA1_c02630 at 247.395 kb on - strand, within PGA1_c02630 at 247.409 kb on + strand, within PGA1_c02630 at 247.409 kb on + strand, within PGA1_c02630 at 247.409 kb on + strand, within PGA1_c02630 at 247.417 kb on - strand, within PGA1_c02630 at 247.417 kb on - strand, within PGA1_c02630 at 247.419 kb on + strand, within PGA1_c02630 at 247.419 kb on + strand, within PGA1_c02630 at 247.419 kb on + strand, within PGA1_c02630 at 247.419 kb on + strand, within PGA1_c02630 at 247.419 kb on + strand, within PGA1_c02630 at 247.419 kb on + strand, within PGA1_c02630 at 247.419 kb on + strand, within PGA1_c02630 at 247.419 kb on + strand, within PGA1_c02630 at 247.419 kb on + strand, within PGA1_c02630 at 247.427 kb on - strand, within PGA1_c02630 at 247.427 kb on - strand, within PGA1_c02630 at 247.427 kb on - strand, within PGA1_c02630 at 247.427 kb on - strand, within PGA1_c02630 at 247.432 kb on + strand, within PGA1_c02630 at 247.522 kb on - strand, within PGA1_c02630 at 247.537 kb on - strand, within PGA1_c02630 at 247.545 kb on + strand, within PGA1_c02630 at 247.549 kb on + strand, within PGA1_c02630 at 247.557 kb on - strand, within PGA1_c02630 at 247.622 kb on + strand, within PGA1_c02630 at 247.632 kb on + strand, within PGA1_c02630 at 247.632 kb on + strand, within PGA1_c02630 at 247.686 kb on - strand, within PGA1_c02630 at 247.772 kb on + strand, within PGA1_c02630 at 247.775 kb on - strand, within PGA1_c02630 at 247.805 kb on + strand, within PGA1_c02630 at 247.813 kb on - strand, within PGA1_c02630 at 247.818 kb on - strand, within PGA1_c02630 at 247.876 kb on + strand, within PGA1_c02630 at 247.892 kb on + strand, within PGA1_c02630 at 247.931 kb on + strand, within PGA1_c02630 at 247.940 kb on - strand, within PGA1_c02630 at 247.964 kb on + strand, within PGA1_c02630 at 247.995 kb on - strand, within PGA1_c02630 at 248.030 kb on + strand, within PGA1_c02630 at 248.030 kb on + strand, within PGA1_c02630 at 248.030 kb on + strand, within PGA1_c02630 at 248.035 kb on + strand, within PGA1_c02630 at 248.038 kb on - strand, within PGA1_c02630 at 248.038 kb on - strand, within PGA1_c02630 at 248.038 kb on - strand, within PGA1_c02630 at 248.038 kb on - strand, within PGA1_c02630 at 248.038 kb on - strand, within PGA1_c02630 at 248.038 kb on - strand, within PGA1_c02630 at 248.053 kb on + strand, within PGA1_c02630 at 248.061 kb on - strand, within PGA1_c02630 at 248.061 kb on - strand, within PGA1_c02630 at 248.117 kb on + strand, within PGA1_c02630 at 248.120 kb on - strand, within PGA1_c02630 at 248.125 kb on - strand, within PGA1_c02630 at 248.125 kb on - strand, within PGA1_c02630 at 248.145 kb on + strand, within PGA1_c02630 at 248.145 kb on + strand, within PGA1_c02630 at 248.145 kb on + strand, within PGA1_c02630 at 248.145 kb on + strand, within PGA1_c02630 at 248.145 kb on + strand, within PGA1_c02630 at 248.145 kb on + strand, within PGA1_c02630 at 248.145 kb on + strand, within PGA1_c02630 at 248.153 kb on - strand, within PGA1_c02630 at 248.153 kb on - strand, within PGA1_c02630 at 248.153 kb on - strand, within PGA1_c02630 at 248.153 kb on - strand, within PGA1_c02630 at 248.155 kb on - strand, within PGA1_c02630 at 248.155 kb on - strand, within PGA1_c02630 at 248.157 kb on + strand, within PGA1_c02630 at 248.157 kb on + strand, within PGA1_c02630 at 248.163 kb on - strand, within PGA1_c02630 at 248.169 kb on + strand, within PGA1_c02630 at 248.169 kb on + strand, within PGA1_c02630 at 248.169 kb on + strand, within PGA1_c02630 at 248.169 kb on + strand, within PGA1_c02630 at 248.169 kb on + strand, within PGA1_c02630 at 248.169 kb on + strand, within PGA1_c02630 at 248.169 kb on + strand, within PGA1_c02630 at 248.169 kb on + strand, within PGA1_c02630 at 248.177 kb on - strand, within PGA1_c02630 at 248.177 kb on - strand, within PGA1_c02630 at 248.177 kb on - strand, within PGA1_c02630 at 248.180 kb on + strand, within PGA1_c02630 at 248.184 kb on - strand, within PGA1_c02630 at 248.188 kb on + strand, within PGA1_c02630 at 248.188 kb on + strand, within PGA1_c02630 at 248.190 kb on + strand, within PGA1_c02630 at 248.198 kb on - strand, within PGA1_c02630 at 248.226 kb on + strand, within PGA1_c02630 at 248.226 kb on + strand, within PGA1_c02630 at 248.234 kb on - strand, within PGA1_c02630 at 248.278 kb on + strand, within PGA1_c02630 at 248.285 kb on - strand, within PGA1_c02630 at 248.312 kb on - strand, within PGA1_c02630 at 248.320 kb on + strand, within PGA1_c02630 at 248.320 kb on + strand, within PGA1_c02630 at 248.344 kb on + strand, within PGA1_c02630 at 248.344 kb on + strand, within PGA1_c02630 at 248.344 kb on + strand, within PGA1_c02630 at 248.344 kb on + strand, within PGA1_c02630 at 248.352 kb on - strand, within PGA1_c02630 at 248.352 kb on - strand, within PGA1_c02630 at 248.352 kb on - strand, within PGA1_c02630 at 248.387 kb on + strand, within PGA1_c02630 at 248.387 kb on + strand, within PGA1_c02630 at 248.425 kb on + strand, within PGA1_c02630 at 248.425 kb on + strand, within PGA1_c02630 at 248.430 kb on + strand, within PGA1_c02630 at 248.430 kb on + strand, within PGA1_c02630 at 248.430 kb on + strand, within PGA1_c02630 at 248.430 kb on + strand, within PGA1_c02630 at 248.435 kb on + strand, within PGA1_c02630 at 248.438 kb on - strand, within PGA1_c02630 at 248.441 kb on - strand, within PGA1_c02630 at 248.446 kb on - strand at 248.446 kb on - strand at 248.460 kb on + strand at 248.463 kb on - strand at 248.463 kb on - strand at 248.468 kb on - strand at 248.474 kb on - strand at 248.482 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.511 kb on + strand at 248.519 kb on - strand at 248.519 kb on - strand at 248.519 kb on - strand at 248.519 kb on - strand at 248.519 kb on - strand at 248.534 kb on + strand at 248.537 kb on - strand at 248.548 kb on + strand at 248.613 kb on + strand at 248.623 kb on + strand at 248.648 kb on + strand at 248.661 kb on + strand at 248.669 kb on - strand at 248.671 kb on - strand at 248.682 kb on + strand at 248.682 kb on + strand at 248.682 kb on + strand at 248.690 kb on - strand at 248.690 kb on - strand at 248.690 kb on - strand at 248.696 kb on - strand at 248.729 kb on + strand at 248.729 kb on + strand at 248.754 kb on + strand at 248.754 kb on + strand at 248.756 kb on + strand at 248.762 kb on - strand at 248.764 kb on - strand at 248.768 kb on - strand at 248.770 kb on - strand at 248.772 kb on + strand at 248.782 kb on + strand at 248.790 kb on - strand at 248.805 kb on + strand, within PGA1_c02640 at 248.846 kb on + strand, within PGA1_c02640 at 248.896 kb on + strand, within PGA1_c02640 at 248.901 kb on + strand, within PGA1_c02640 at 248.914 kb on + strand, within PGA1_c02640 at 248.922 kb on - strand, within PGA1_c02640 at 248.947 kb on + strand, within PGA1_c02640 at 248.947 kb on + strand, within PGA1_c02640 at 248.952 kb on + strand, within PGA1_c02640 at 248.952 kb on + strand, within PGA1_c02640 at 248.955 kb on - strand, within PGA1_c02640 at 248.955 kb on - strand, within PGA1_c02640 at 248.955 kb on - strand, within PGA1_c02640 at 248.960 kb on - strand, within PGA1_c02640 at 249.013 kb on + strand, within PGA1_c02640 at 249.029 kb on + strand, within PGA1_c02640 at 249.137 kb on + strand, within PGA1_c02640 at 249.147 kb on + strand, within PGA1_c02640 at 249.147 kb on + strand, within PGA1_c02640 at 249.162 kb on + strand, within PGA1_c02640 at 249.178 kb on - strand, within PGA1_c02640 at 249.195 kb on + strand, within PGA1_c02640 at 249.195 kb on + strand, within PGA1_c02640 at 249.203 kb on - strand, within PGA1_c02640 at 249.204 kb on - strand, within PGA1_c02640 at 249.206 kb on + strand, within PGA1_c02640 at 249.234 kb on + strand, within PGA1_c02640 at 249.241 kb on - strand, within PGA1_c02640 at 249.301 kb on - strand, within PGA1_c02640 at 249.339 kb on + strand, within PGA1_c02640 at 249.347 kb on - strand, within PGA1_c02640 at 249.347 kb on - strand, within PGA1_c02640 at 249.347 kb on - strand, within PGA1_c02640 at 249.352 kb on - strand, within PGA1_c02640 at 249.361 kb on + strand, within PGA1_c02640 at 249.361 kb on - strand, within PGA1_c02640 at 249.369 kb on - strand, within PGA1_c02640 at 249.369 kb on - strand, within PGA1_c02640 at 249.369 kb on - strand, within PGA1_c02640 at 249.392 kb on + strand, within PGA1_c02640 at 249.393 kb on - strand, within PGA1_c02640 at 249.400 kb on - strand, within PGA1_c02640 at 249.402 kb on + strand, within PGA1_c02640 at 249.410 kb on - strand, within PGA1_c02640 at 249.410 kb on - strand, within PGA1_c02640 at 249.428 kb on + strand, within PGA1_c02640 at 249.433 kb on + strand, within PGA1_c02640 at 249.433 kb on + strand, within PGA1_c02640 at 249.433 kb on + strand, within PGA1_c02640 at 249.433 kb on + strand, within PGA1_c02640 at 249.436 kb on - strand, within PGA1_c02640 at 249.441 kb on - strand, within PGA1_c02640 at 249.441 kb on - strand, within PGA1_c02640 at 249.452 kb on + strand, within PGA1_c02640 at 249.486 kb on + strand, within PGA1_c02640 at 249.510 kb on + strand, within PGA1_c02640 at 249.531 kb on - strand, within PGA1_c02640 at 249.532 kb on + strand, within PGA1_c02640 at 249.553 kb on + strand, within PGA1_c02640 at 249.559 kb on - strand, within PGA1_c02640 at 249.559 kb on - strand, within PGA1_c02640 at 249.570 kb on + strand, within PGA1_c02640 at 249.570 kb on + strand, within PGA1_c02640 at 249.614 kb on + strand, within PGA1_c02640
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 245,737 + PGA1_c02610 0.81 +0.6 245,760 - PGA1_c02610 0.84 +0.8 245,790 + PGA1_c02610 0.88 -0.5 245,835 + +0.3 245,835 + +0.4 245,835 + +1.1 245,843 - -1.6 245,882 + +0.8 245,886 + +0.7 245,902 - -0.4 245,937 - +0.5 245,937 - -1.4 245,964 + PGA1_c02620 0.10 +0.6 245,964 + PGA1_c02620 0.10 +0.2 245,964 + PGA1_c02620 0.10 -0.9 245,972 - PGA1_c02620 0.11 -1.0 245,978 + PGA1_c02620 0.12 -0.9 246,013 + PGA1_c02620 0.17 +0.3 246,033 + PGA1_c02620 0.19 +0.5 246,086 + PGA1_c02620 0.26 +0.4 246,107 - PGA1_c02620 0.29 +1.0 246,137 - PGA1_c02620 0.33 -1.4 246,169 + PGA1_c02620 0.37 -0.1 246,172 - PGA1_c02620 0.37 -0.6 246,181 + PGA1_c02620 0.39 -1.8 246,181 + PGA1_c02620 0.39 +0.2 246,195 + PGA1_c02620 0.40 -1.8 246,203 - PGA1_c02620 0.41 +1.8 246,229 - PGA1_c02620 0.45 -0.5 246,229 - PGA1_c02620 0.45 -1.4 246,295 - PGA1_c02620 0.53 -1.0 246,379 + PGA1_c02620 0.64 -1.4 246,380 - PGA1_c02620 0.64 +0.2 246,381 - PGA1_c02620 0.64 -1.0 246,387 - PGA1_c02620 0.65 +1.5 246,387 - PGA1_c02620 0.65 +0.1 246,447 + PGA1_c02620 0.73 -0.7 246,465 + PGA1_c02620 0.75 -1.2 246,497 + PGA1_c02620 0.79 -1.0 246,511 - PGA1_c02620 0.81 -1.2 246,609 + -2.6 246,609 + -1.0 246,609 + -0.4 246,617 - +0.1 246,617 - +1.1 246,617 - -0.3 246,655 + -0.6 246,663 - +0.5 246,699 + +0.7 246,710 + +0.1 246,712 - +0.8 246,718 - +0.8 246,718 - -2.1 246,727 - +1.2 246,751 - -1.7 246,774 + -0.4 246,782 - -0.6 246,836 - -1.4 246,861 + +0.1 246,884 + -0.2 246,892 - -0.4 246,953 + PGA1_c02630 0.13 +0.9 246,977 + PGA1_c02630 0.14 +0.9 246,980 - PGA1_c02630 0.14 +1.0 246,992 + PGA1_c02630 0.15 +0.6 247,018 + PGA1_c02630 0.16 -0.5 247,058 - PGA1_c02630 0.18 +1.9 247,098 + PGA1_c02630 0.21 -1.2 247,098 + PGA1_c02630 0.21 -1.1 247,098 + PGA1_c02630 0.21 -0.1 247,098 + PGA1_c02630 0.21 -1.1 247,106 - PGA1_c02630 0.21 -1.4 247,106 - PGA1_c02630 0.21 +1.0 247,106 - PGA1_c02630 0.21 +1.2 247,193 + PGA1_c02630 0.25 +0.8 247,216 + PGA1_c02630 0.27 +1.2 247,222 + PGA1_c02630 0.27 +1.7 247,230 - PGA1_c02630 0.27 +0.3 247,232 + PGA1_c02630 0.27 +1.1 247,240 + PGA1_c02630 0.28 +0.9 247,255 + PGA1_c02630 0.29 -1.2 247,307 - PGA1_c02630 0.31 +0.4 247,307 - PGA1_c02630 0.31 -0.4 247,342 - PGA1_c02630 0.33 +1.3 247,342 - PGA1_c02630 0.33 +0.3 247,342 - PGA1_c02630 0.33 -0.1 247,342 - PGA1_c02630 0.33 -2.6 247,365 + PGA1_c02630 0.34 +1.1 247,374 + PGA1_c02630 0.35 +0.1 247,382 - PGA1_c02630 0.35 -0.2 247,392 + PGA1_c02630 0.36 -2.2 247,392 + PGA1_c02630 0.36 -2.0 247,395 - PGA1_c02630 0.36 -0.0 247,409 + PGA1_c02630 0.37 +0.7 247,409 + PGA1_c02630 0.37 +0.8 247,409 + PGA1_c02630 0.37 -0.9 247,417 - PGA1_c02630 0.37 +0.6 247,417 - PGA1_c02630 0.37 -0.5 247,419 + PGA1_c02630 0.37 +3.4 247,419 + PGA1_c02630 0.37 -1.9 247,419 + PGA1_c02630 0.37 -2.1 247,419 + PGA1_c02630 0.37 +1.3 247,419 + PGA1_c02630 0.37 +1.1 247,419 + PGA1_c02630 0.37 -0.7 247,419 + PGA1_c02630 0.37 -0.5 247,419 + PGA1_c02630 0.37 -1.6 247,419 + PGA1_c02630 0.37 +0.2 247,427 - PGA1_c02630 0.38 -0.1 247,427 - PGA1_c02630 0.38 -0.5 247,427 - PGA1_c02630 0.38 +0.8 247,427 - PGA1_c02630 0.38 +0.5 247,432 + PGA1_c02630 0.38 -0.2 247,522 - PGA1_c02630 0.42 +0.1 247,537 - PGA1_c02630 0.43 -1.4 247,545 + PGA1_c02630 0.44 -3.0 247,549 + PGA1_c02630 0.44 +0.1 247,557 - PGA1_c02630 0.44 -2.5 247,622 + PGA1_c02630 0.48 -0.9 247,632 + PGA1_c02630 0.48 +0.2 247,632 + PGA1_c02630 0.48 +0.3 247,686 - PGA1_c02630 0.51 -1.5 247,772 + PGA1_c02630 0.55 +0.3 247,775 - PGA1_c02630 0.55 +0.3 247,805 + PGA1_c02630 0.57 +0.4 247,813 - PGA1_c02630 0.57 +0.2 247,818 - PGA1_c02630 0.58 -1.1 247,876 + PGA1_c02630 0.61 -0.5 247,892 + PGA1_c02630 0.62 -0.7 247,931 + PGA1_c02630 0.64 -0.0 247,940 - PGA1_c02630 0.64 +0.8 247,964 + PGA1_c02630 0.65 -2.1 247,995 - PGA1_c02630 0.67 +0.4 248,030 + PGA1_c02630 0.69 -0.1 248,030 + PGA1_c02630 0.69 -0.6 248,030 + PGA1_c02630 0.69 -0.4 248,035 + PGA1_c02630 0.69 +1.7 248,038 - PGA1_c02630 0.69 +1.1 248,038 - PGA1_c02630 0.69 -2.1 248,038 - PGA1_c02630 0.69 +1.1 248,038 - PGA1_c02630 0.69 -0.9 248,038 - PGA1_c02630 0.69 -0.7 248,038 - PGA1_c02630 0.69 +0.2 248,053 + PGA1_c02630 0.70 -1.8 248,061 - PGA1_c02630 0.70 -2.3 248,061 - PGA1_c02630 0.70 +0.5 248,117 + PGA1_c02630 0.73 +1.2 248,120 - 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Or see this region's nucleotide sequence