Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24990

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24970 and PGA1_c24980 are separated by 143 nucleotidesPGA1_c24980 and PGA1_c24990 are separated by 81 nucleotidesPGA1_c24990 and PGA1_c25000 overlap by 4 nucleotidesPGA1_c25000 and PGA1_c25010 are separated by 0 nucleotides PGA1_c24970: PGA1_c24970 - putative hydrolase, HAD superfamily, at 2,602,278 to 2,603,171 _c24970 PGA1_c24980: PGA1_c24980 - maoC like domain-containing protein, at 2,603,315 to 2,603,758 _c24980 PGA1_c24990: PGA1_c24990 - riboflavin biosynthesis protein RibF, at 2,603,840 to 2,604,772 _c24990 PGA1_c25000: PGA1_c25000 - Uncharacterized conserved protein, at 2,604,769 to 2,605,239 _c25000 PGA1_c25010: PGA1_c25010 - low specificity L-threonine aldolase LtaE, at 2,605,240 to 2,606,274 _c25010 Position (kb) 2603 2604 2605Strain fitness (log2 ratio) -2 -1 0 1 2at 2602.890 kb on - strand, within PGA1_c24970at 2602.953 kb on + strand, within PGA1_c24970at 2602.966 kb on - strand, within PGA1_c24970at 2602.966 kb on - strand, within PGA1_c24970at 2602.990 kb on + strand, within PGA1_c24970at 2603.010 kb on - strand, within PGA1_c24970at 2603.010 kb on - strand, within PGA1_c24970at 2603.020 kb on - strand, within PGA1_c24970at 2603.031 kb on + strand, within PGA1_c24970at 2603.310 kb on + strandat 2603.310 kb on + strandat 2603.374 kb on + strand, within PGA1_c24980at 2603.405 kb on - strand, within PGA1_c24980at 2603.405 kb on - strand, within PGA1_c24980at 2603.405 kb on - strand, within PGA1_c24980at 2603.453 kb on - strand, within PGA1_c24980at 2603.469 kb on - strand, within PGA1_c24980at 2603.506 kb on - strand, within PGA1_c24980at 2603.509 kb on + strand, within PGA1_c24980at 2603.517 kb on - strand, within PGA1_c24980at 2603.632 kb on + strand, within PGA1_c24980at 2603.634 kb on - strand, within PGA1_c24980at 2603.718 kb on - strandat 2603.766 kb on - strandat 2603.783 kb on + strandat 2603.826 kb on + strandat 2603.829 kb on + strandat 2604.738 kb on + strandat 2604.746 kb on - strandat 2604.787 kb on - strandat 2604.834 kb on + strand, within PGA1_c25000at 2604.842 kb on + strand, within PGA1_c25000at 2604.909 kb on - strand, within PGA1_c25000at 2604.930 kb on - strand, within PGA1_c25000at 2605.052 kb on - strand, within PGA1_c25000at 2605.057 kb on + strand, within PGA1_c25000at 2605.062 kb on + strand, within PGA1_c25000at 2605.065 kb on - strand, within PGA1_c25000at 2605.065 kb on - strand, within PGA1_c25000at 2605.095 kb on + strand, within PGA1_c25000at 2605.109 kb on - strand, within PGA1_c25000at 2605.167 kb on + strand, within PGA1_c25000at 2605.169 kb on + strand, within PGA1_c25000at 2605.203 kb on + strandat 2605.258 kb on - strandat 2605.259 kb on + strandat 2605.299 kb on - strandat 2605.299 kb on - strandat 2605.362 kb on - strand, within PGA1_c25010at 2605.414 kb on + strand, within PGA1_c25010at 2605.471 kb on - strand, within PGA1_c25010at 2605.473 kb on + strand, within PGA1_c25010at 2605.473 kb on + strand, within PGA1_c25010at 2605.473 kb on + strand, within PGA1_c25010at 2605.473 kb on + strand, within PGA1_c25010at 2605.554 kb on + strand, within PGA1_c25010at 2605.570 kb on - strand, within PGA1_c25010at 2605.580 kb on + strand, within PGA1_c25010at 2605.680 kb on + strand, within PGA1_c25010at 2605.680 kb on + strand, within PGA1_c25010at 2605.680 kb on + strand, within PGA1_c25010at 2605.680 kb on + strand, within PGA1_c25010at 2605.680 kb on + strand, within PGA1_c25010at 2605.688 kb on + strand, within PGA1_c25010at 2605.688 kb on - strand, within PGA1_c25010at 2605.688 kb on - strand, within PGA1_c25010at 2605.718 kb on - strand, within PGA1_c25010at 2605.725 kb on + strand, within PGA1_c25010at 2605.752 kb on - strand, within PGA1_c25010at 2605.752 kb on - strand, within PGA1_c25010

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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2,602,890 - PGA1_c24970 0.68 -1.6
2,602,953 + PGA1_c24970 0.76 -1.7
2,602,966 - PGA1_c24970 0.77 -2.0
2,602,966 - PGA1_c24970 0.77 -2.0
2,602,990 + PGA1_c24970 0.80 +0.5
2,603,010 - PGA1_c24970 0.82 -0.9
2,603,010 - PGA1_c24970 0.82 +0.9
2,603,020 - PGA1_c24970 0.83 -1.3
2,603,031 + PGA1_c24970 0.84 -0.2
2,603,310 + +1.2
2,603,310 + +0.8
2,603,374 + PGA1_c24980 0.13 -1.3
2,603,405 - PGA1_c24980 0.20 +2.3
2,603,405 - PGA1_c24980 0.20 +1.8
2,603,405 - PGA1_c24980 0.20 -1.3
2,603,453 - PGA1_c24980 0.31 -1.5
2,603,469 - PGA1_c24980 0.35 +0.2
2,603,506 - PGA1_c24980 0.43 +0.8
2,603,509 + PGA1_c24980 0.44 +0.8
2,603,517 - PGA1_c24980 0.45 +1.2
2,603,632 + PGA1_c24980 0.71 -2.5
2,603,634 - PGA1_c24980 0.72 +1.8
2,603,718 - +0.7
2,603,766 - -0.6
2,603,783 + -0.5
2,603,826 + +1.2
2,603,829 + +0.9
2,604,738 + -1.9
2,604,746 - +0.7
2,604,787 - -0.7
2,604,834 + PGA1_c25000 0.14 +1.0
2,604,842 + PGA1_c25000 0.15 -0.4
2,604,909 - PGA1_c25000 0.30 +0.3
2,604,930 - PGA1_c25000 0.34 +1.7
2,605,052 - PGA1_c25000 0.60 -0.3
2,605,057 + PGA1_c25000 0.61 +0.5
2,605,062 + PGA1_c25000 0.62 -1.2
2,605,065 - PGA1_c25000 0.63 +0.8
2,605,065 - PGA1_c25000 0.63 -1.0
2,605,095 + PGA1_c25000 0.69 +0.4
2,605,109 - PGA1_c25000 0.72 +1.3
2,605,167 + PGA1_c25000 0.85 +1.7
2,605,169 + PGA1_c25000 0.85 +0.4
2,605,203 + +0.7
2,605,258 - -0.4
2,605,259 + -1.7
2,605,299 - -0.9
2,605,299 - -0.2
2,605,362 - PGA1_c25010 0.12 +0.0
2,605,414 + PGA1_c25010 0.17 +0.8
2,605,471 - PGA1_c25010 0.22 -1.2
2,605,473 + PGA1_c25010 0.23 -0.2
2,605,473 + PGA1_c25010 0.23 +0.2
2,605,473 + PGA1_c25010 0.23 +0.4
2,605,473 + PGA1_c25010 0.23 +0.3
2,605,554 + PGA1_c25010 0.30 -0.7
2,605,570 - PGA1_c25010 0.32 -0.7
2,605,580 + PGA1_c25010 0.33 +1.4
2,605,680 + PGA1_c25010 0.43 +0.5
2,605,680 + PGA1_c25010 0.43 +0.0
2,605,680 + PGA1_c25010 0.43 -0.4
2,605,680 + PGA1_c25010 0.43 -1.7
2,605,680 + PGA1_c25010 0.43 +0.8
2,605,688 + PGA1_c25010 0.43 -1.2
2,605,688 - PGA1_c25010 0.43 -0.6
2,605,688 - PGA1_c25010 0.43 -0.3
2,605,718 - PGA1_c25010 0.46 -0.3
2,605,725 + PGA1_c25010 0.47 +0.4
2,605,752 - PGA1_c25010 0.49 +1.5
2,605,752 - PGA1_c25010 0.49 -0.5

Or see this region's nucleotide sequence