Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24970 and PGA1_c24980 are separated by 143 nucleotides PGA1_c24980 and PGA1_c24990 are separated by 81 nucleotides
PGA1_c24970: PGA1_c24970 - putative hydrolase, HAD superfamily, at 2,602,278 to 2,603,171
_c24970
PGA1_c24980: PGA1_c24980 - maoC like domain-containing protein, at 2,603,315 to 2,603,758
_c24980
PGA1_c24990: PGA1_c24990 - riboflavin biosynthesis protein RibF, at 2,603,840 to 2,604,772
_c24990
Position (kb)
2603
2604 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2602.327 kb on + strand at 2602.333 kb on - strand at 2602.334 kb on - strand at 2602.335 kb on - strand at 2602.361 kb on + strand at 2602.388 kb on + strand, within PGA1_c24970 at 2602.401 kb on - strand, within PGA1_c24970 at 2602.402 kb on - strand, within PGA1_c24970 at 2602.413 kb on + strand, within PGA1_c24970 at 2602.421 kb on - strand, within PGA1_c24970 at 2602.521 kb on + strand, within PGA1_c24970 at 2602.566 kb on + strand, within PGA1_c24970 at 2602.691 kb on + strand, within PGA1_c24970 at 2602.693 kb on - strand, within PGA1_c24970 at 2602.726 kb on + strand, within PGA1_c24970 at 2602.783 kb on - strand, within PGA1_c24970 at 2602.790 kb on + strand, within PGA1_c24970 at 2602.798 kb on - strand, within PGA1_c24970 at 2602.798 kb on - strand, within PGA1_c24970 at 2602.808 kb on + strand, within PGA1_c24970 at 2602.808 kb on - strand, within PGA1_c24970 at 2602.890 kb on - strand, within PGA1_c24970 at 2602.953 kb on + strand, within PGA1_c24970 at 2602.966 kb on - strand, within PGA1_c24970 at 2602.966 kb on - strand, within PGA1_c24970 at 2602.990 kb on + strand, within PGA1_c24970 at 2603.010 kb on - strand, within PGA1_c24970 at 2603.010 kb on - strand, within PGA1_c24970 at 2603.020 kb on - strand, within PGA1_c24970 at 2603.031 kb on + strand, within PGA1_c24970 at 2603.310 kb on + strand at 2603.310 kb on + strand at 2603.374 kb on + strand, within PGA1_c24980 at 2603.405 kb on - strand, within PGA1_c24980 at 2603.405 kb on - strand, within PGA1_c24980 at 2603.405 kb on - strand, within PGA1_c24980 at 2603.453 kb on - strand, within PGA1_c24980 at 2603.469 kb on - strand, within PGA1_c24980 at 2603.506 kb on - strand, within PGA1_c24980 at 2603.509 kb on + strand, within PGA1_c24980 at 2603.517 kb on - strand, within PGA1_c24980 at 2603.632 kb on + strand, within PGA1_c24980 at 2603.634 kb on - strand, within PGA1_c24980 at 2603.718 kb on - strand at 2603.766 kb on - strand at 2603.783 kb on + strand at 2603.826 kb on + strand at 2603.829 kb on + strand at 2604.738 kb on + strand at 2604.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,602,327 + -0.6 2,602,333 - +1.6 2,602,334 - -2.7 2,602,335 - +0.8 2,602,361 + -1.2 2,602,388 + PGA1_c24970 0.12 +1.4 2,602,401 - PGA1_c24970 0.14 -0.2 2,602,402 - PGA1_c24970 0.14 -0.6 2,602,413 + PGA1_c24970 0.15 -2.0 2,602,421 - PGA1_c24970 0.16 +0.5 2,602,521 + PGA1_c24970 0.27 -0.0 2,602,566 + PGA1_c24970 0.32 +0.7 2,602,691 + PGA1_c24970 0.46 -0.7 2,602,693 - PGA1_c24970 0.46 -0.7 2,602,726 + PGA1_c24970 0.50 +0.8 2,602,783 - PGA1_c24970 0.56 +0.0 2,602,790 + PGA1_c24970 0.57 +1.7 2,602,798 - PGA1_c24970 0.58 +0.1 2,602,798 - PGA1_c24970 0.58 -1.5 2,602,808 + PGA1_c24970 0.59 -1.7 2,602,808 - PGA1_c24970 0.59 -0.2 2,602,890 - PGA1_c24970 0.68 -1.6 2,602,953 + PGA1_c24970 0.76 -1.7 2,602,966 - PGA1_c24970 0.77 -2.0 2,602,966 - PGA1_c24970 0.77 -2.0 2,602,990 + PGA1_c24970 0.80 +0.5 2,603,010 - PGA1_c24970 0.82 -0.9 2,603,010 - PGA1_c24970 0.82 +0.9 2,603,020 - PGA1_c24970 0.83 -1.3 2,603,031 + PGA1_c24970 0.84 -0.2 2,603,310 + +1.2 2,603,310 + +0.8 2,603,374 + PGA1_c24980 0.13 -1.3 2,603,405 - PGA1_c24980 0.20 +2.3 2,603,405 - PGA1_c24980 0.20 +1.8 2,603,405 - PGA1_c24980 0.20 -1.3 2,603,453 - PGA1_c24980 0.31 -1.5 2,603,469 - PGA1_c24980 0.35 +0.2 2,603,506 - PGA1_c24980 0.43 +0.8 2,603,509 + PGA1_c24980 0.44 +0.8 2,603,517 - PGA1_c24980 0.45 +1.2 2,603,632 + PGA1_c24980 0.71 -2.5 2,603,634 - PGA1_c24980 0.72 +1.8 2,603,718 - +0.7 2,603,766 - -0.6 2,603,783 + -0.5 2,603,826 + +1.2 2,603,829 + +0.9 2,604,738 + -1.9 2,604,746 - +0.7
Or see this region's nucleotide sequence