Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24740 and PGA1_c24750 overlap by 4 nucleotides PGA1_c24750 and PGA1_c24760 are separated by 609 nucleotides
PGA1_c24740: PGA1_c24740 - Uncharacterized conserved protein, at 2,579,414 to 2,580,481
_c24740
PGA1_c24750: PGA1_c24750 - uncharacterized protein, YfiH family, at 2,580,478 to 2,581,245
_c24750
PGA1_c24760: PGA1_c24760 - hypothetical protein, at 2,581,855 to 2,582,631
_c24760
Position (kb)
2580
2581
2582 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2580.475 kb on - strand at 2580.593 kb on + strand, within PGA1_c24750 at 2580.626 kb on - strand, within PGA1_c24750 at 2580.656 kb on + strand, within PGA1_c24750 at 2580.683 kb on - strand, within PGA1_c24750 at 2580.684 kb on + strand, within PGA1_c24750 at 2580.745 kb on + strand, within PGA1_c24750 at 2580.792 kb on - strand, within PGA1_c24750 at 2580.864 kb on - strand, within PGA1_c24750 at 2580.883 kb on - strand, within PGA1_c24750 at 2580.980 kb on + strand, within PGA1_c24750 at 2581.060 kb on + strand, within PGA1_c24750 at 2581.088 kb on + strand, within PGA1_c24750 at 2581.096 kb on - strand, within PGA1_c24750 at 2581.131 kb on + strand, within PGA1_c24750 at 2581.139 kb on - strand, within PGA1_c24750 at 2581.264 kb on - strand at 2581.286 kb on + strand at 2581.294 kb on - strand at 2581.345 kb on - strand at 2581.412 kb on + strand at 2581.421 kb on + strand at 2581.426 kb on + strand at 2581.502 kb on + strand at 2581.505 kb on - strand at 2581.517 kb on + strand at 2581.525 kb on - strand at 2581.597 kb on + strand at 2581.661 kb on + strand at 2581.697 kb on - strand at 2581.764 kb on + strand at 2581.811 kb on + strand at 2581.833 kb on - strand at 2581.852 kb on + strand at 2581.935 kb on + strand, within PGA1_c24760 at 2581.935 kb on + strand, within PGA1_c24760 at 2581.981 kb on + strand, within PGA1_c24760 at 2581.989 kb on - strand, within PGA1_c24760 at 2582.084 kb on - strand, within PGA1_c24760 at 2582.138 kb on - strand, within PGA1_c24760 at 2582.163 kb on + strand, within PGA1_c24760 at 2582.181 kb on - strand, within PGA1_c24760 at 2582.227 kb on - strand, within PGA1_c24760 at 2582.242 kb on + strand, within PGA1_c24760
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 2,580,475 - +0.2 2,580,593 + PGA1_c24750 0.15 +2.4 2,580,626 - PGA1_c24750 0.19 +1.7 2,580,656 + PGA1_c24750 0.23 -0.3 2,580,683 - PGA1_c24750 0.27 +1.4 2,580,684 + PGA1_c24750 0.27 +0.7 2,580,745 + PGA1_c24750 0.35 -1.1 2,580,792 - PGA1_c24750 0.41 -1.5 2,580,864 - PGA1_c24750 0.50 +1.1 2,580,883 - PGA1_c24750 0.53 -0.2 2,580,980 + PGA1_c24750 0.65 -0.2 2,581,060 + PGA1_c24750 0.76 +0.5 2,581,088 + PGA1_c24750 0.79 +0.2 2,581,096 - PGA1_c24750 0.80 +0.4 2,581,131 + PGA1_c24750 0.85 +0.6 2,581,139 - PGA1_c24750 0.86 +1.0 2,581,264 - -0.2 2,581,286 + -0.3 2,581,294 - -0.6 2,581,345 - +0.8 2,581,412 + -1.6 2,581,421 + +1.0 2,581,426 + +1.3 2,581,502 + -0.9 2,581,505 - -0.5 2,581,517 + -0.5 2,581,525 - -0.4 2,581,597 + -0.5 2,581,661 + +1.1 2,581,697 - -0.7 2,581,764 + +0.5 2,581,811 + +0.9 2,581,833 - +1.1 2,581,852 + -0.2 2,581,935 + PGA1_c24760 0.10 +0.3 2,581,935 + PGA1_c24760 0.10 +0.0 2,581,981 + PGA1_c24760 0.16 +0.4 2,581,989 - PGA1_c24760 0.17 -2.1 2,582,084 - PGA1_c24760 0.29 -0.6 2,582,138 - PGA1_c24760 0.36 +0.4 2,582,163 + PGA1_c24760 0.40 -2.1 2,582,181 - PGA1_c24760 0.42 +0.3 2,582,227 - PGA1_c24760 0.48 +2.1 2,582,242 + PGA1_c24760 0.50 +0.4
Or see this region's nucleotide sequence