Strain Fitness in Marinobacter adhaerens HP15 around HP15_2303

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2301 and HP15_2302 are separated by 162 nucleotidesHP15_2302 and HP15_2303 are separated by 31 nucleotidesHP15_2303 and HP15_2304 are separated by 92 nucleotides HP15_2301: HP15_2301 - response regulator receiver domain protein (CheY-), at 2,422,453 to 2,422,836 _2301 HP15_2302: HP15_2302 - flagellar biosynthesis sigma factor FliA, at 2,422,999 to 2,423,742 _2302 HP15_2303: HP15_2303 - flagellar synthesis regulator FleN, at 2,423,774 to 2,424,562 _2303 HP15_2304: HP15_2304 - flagellar biosynthesis regulator FlhF, at 2,424,655 to 2,425,962 _2304 Position (kb) 2423 2424 2425Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2422.987 kb on + strandat 2423.070 kb on + strandat 2423.070 kb on + strandat 2423.070 kb on + strandat 2423.078 kb on - strand, within HP15_2302at 2423.078 kb on - strand, within HP15_2302at 2423.078 kb on - strand, within HP15_2302at 2423.093 kb on - strand, within HP15_2302at 2423.119 kb on - strand, within HP15_2302at 2423.231 kb on + strand, within HP15_2302at 2423.346 kb on + strand, within HP15_2302at 2423.346 kb on + strand, within HP15_2302at 2423.346 kb on + strand, within HP15_2302at 2423.354 kb on - strand, within HP15_2302at 2423.370 kb on + strand, within HP15_2302at 2423.448 kb on + strand, within HP15_2302at 2423.463 kb on - strand, within HP15_2302at 2423.557 kb on - strand, within HP15_2302at 2423.564 kb on + strand, within HP15_2302at 2424.042 kb on + strand, within HP15_2303at 2424.109 kb on + strand, within HP15_2303at 2424.117 kb on - strand, within HP15_2303at 2424.290 kb on + strand, within HP15_2303at 2424.493 kb on + strandat 2424.625 kb on - strandat 2424.640 kb on - strandat 2424.751 kb on - strandat 2424.762 kb on - strandat 2424.891 kb on + strand, within HP15_2304at 2425.021 kb on + strand, within HP15_2304at 2425.024 kb on - strand, within HP15_2304at 2425.029 kb on - strand, within HP15_2304at 2425.029 kb on - strand, within HP15_2304at 2425.034 kb on - strand, within HP15_2304at 2425.173 kb on + strand, within HP15_2304at 2425.263 kb on + strand, within HP15_2304at 2425.296 kb on + strand, within HP15_2304at 2425.326 kb on + strand, within HP15_2304at 2425.413 kb on - strand, within HP15_2304at 2425.413 kb on - strand, within HP15_2304at 2425.451 kb on - strand, within HP15_2304at 2425.561 kb on + strand, within HP15_2304

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,422,987 + +0.0
2,423,070 + -0.9
2,423,070 + -0.2
2,423,070 + +2.9
2,423,078 - HP15_2302 0.11 +0.2
2,423,078 - HP15_2302 0.11 +0.2
2,423,078 - HP15_2302 0.11 -0.1
2,423,093 - HP15_2302 0.13 +0.1
2,423,119 - HP15_2302 0.16 +0.7
2,423,231 + HP15_2302 0.31 -0.0
2,423,346 + HP15_2302 0.47 -0.6
2,423,346 + HP15_2302 0.47 +0.6
2,423,346 + HP15_2302 0.47 +1.0
2,423,354 - HP15_2302 0.48 +2.3
2,423,370 + HP15_2302 0.50 -0.3
2,423,448 + HP15_2302 0.60 -0.1
2,423,463 - HP15_2302 0.62 -0.3
2,423,557 - HP15_2302 0.75 +1.2
2,423,564 + HP15_2302 0.76 -0.1
2,424,042 + HP15_2303 0.34 -2.3
2,424,109 + HP15_2303 0.42 -4.1
2,424,117 - HP15_2303 0.43 -2.8
2,424,290 + HP15_2303 0.65 -0.7
2,424,493 + -2.1
2,424,625 - -1.5
2,424,640 - -0.6
2,424,751 - -2.0
2,424,762 - +1.2
2,424,891 + HP15_2304 0.18 -0.9
2,425,021 + HP15_2304 0.28 +0.2
2,425,024 - HP15_2304 0.28 -1.1
2,425,029 - HP15_2304 0.29 +0.2
2,425,029 - HP15_2304 0.29 -0.3
2,425,034 - HP15_2304 0.29 +0.2
2,425,173 + HP15_2304 0.40 +0.2
2,425,263 + HP15_2304 0.46 +0.0
2,425,296 + HP15_2304 0.49 -1.4
2,425,326 + HP15_2304 0.51 -1.7
2,425,413 - HP15_2304 0.58 +0.0
2,425,413 - HP15_2304 0.58 -0.6
2,425,451 - HP15_2304 0.61 -0.9
2,425,561 + HP15_2304 0.69 -0.6

Or see this region's nucleotide sequence