Strain Fitness in Marinobacter adhaerens HP15 around HP15_2220

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2219 and HP15_2220 are separated by 39 nucleotidesHP15_2220 and HP15_2221 overlap by 4 nucleotides HP15_2219: HP15_2219 - family S49 unassigned peptidase, at 2,335,315 to 2,336,358 _2219 HP15_2220: HP15_2220 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 2,336,398 to 2,337,045 _2220 HP15_2221: HP15_2221 - pseudouridine synthase, RluA family, at 2,337,042 to 2,338,100 _2221 Position (kb) 2336 2337 2338Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2335.417 kb on + strandat 2335.425 kb on + strand, within HP15_2219at 2335.450 kb on - strand, within HP15_2219at 2335.462 kb on + strand, within HP15_2219at 2335.480 kb on - strand, within HP15_2219at 2335.525 kb on - strand, within HP15_2219at 2335.573 kb on + strand, within HP15_2219at 2335.594 kb on - strand, within HP15_2219at 2335.686 kb on - strand, within HP15_2219at 2335.722 kb on + strand, within HP15_2219at 2335.722 kb on + strand, within HP15_2219at 2335.783 kb on - strand, within HP15_2219at 2335.798 kb on - strand, within HP15_2219at 2335.833 kb on - strand, within HP15_2219at 2335.930 kb on + strand, within HP15_2219at 2336.018 kb on + strand, within HP15_2219at 2336.023 kb on + strand, within HP15_2219at 2336.106 kb on + strand, within HP15_2219at 2336.114 kb on - strand, within HP15_2219at 2336.150 kb on - strand, within HP15_2219at 2336.191 kb on - strand, within HP15_2219at 2336.193 kb on + strand, within HP15_2219at 2336.193 kb on + strand, within HP15_2219at 2336.201 kb on - strand, within HP15_2219at 2336.201 kb on - strand, within HP15_2219at 2336.396 kb on + strandat 2336.469 kb on + strand, within HP15_2220at 2336.645 kb on - strand, within HP15_2220at 2336.677 kb on + strand, within HP15_2220at 2336.756 kb on + strand, within HP15_2220at 2336.798 kb on + strand, within HP15_2220at 2336.932 kb on + strand, within HP15_2220at 2336.955 kb on - strand, within HP15_2220at 2336.975 kb on - strand, within HP15_2220at 2336.994 kb on - strandat 2337.011 kb on - strandat 2337.279 kb on + strand, within HP15_2221at 2337.287 kb on - strand, within HP15_2221at 2337.346 kb on - strand, within HP15_2221at 2337.346 kb on - strand, within HP15_2221at 2337.387 kb on - strand, within HP15_2221at 2337.421 kb on - strand, within HP15_2221at 2337.443 kb on + strand, within HP15_2221at 2337.571 kb on - strand, within HP15_2221at 2337.571 kb on - strand, within HP15_2221at 2337.576 kb on - strand, within HP15_2221at 2337.582 kb on - strand, within HP15_2221at 2337.625 kb on + strand, within HP15_2221at 2337.674 kb on + strand, within HP15_2221at 2337.760 kb on - strand, within HP15_2221at 2337.913 kb on + strand, within HP15_2221at 2337.921 kb on - strand, within HP15_2221at 2337.953 kb on - strand, within HP15_2221at 2337.985 kb on - strand, within HP15_2221

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,335,417 + +0.3
2,335,425 + HP15_2219 0.11 -0.2
2,335,450 - HP15_2219 0.13 +0.7
2,335,462 + HP15_2219 0.14 -0.6
2,335,480 - HP15_2219 0.16 -0.1
2,335,525 - HP15_2219 0.20 -0.4
2,335,573 + HP15_2219 0.25 +1.1
2,335,594 - HP15_2219 0.27 +0.0
2,335,686 - HP15_2219 0.36 -0.1
2,335,722 + HP15_2219 0.39 -1.4
2,335,722 + HP15_2219 0.39 +0.1
2,335,783 - HP15_2219 0.45 -0.3
2,335,798 - HP15_2219 0.46 -0.5
2,335,833 - HP15_2219 0.50 -0.6
2,335,930 + HP15_2219 0.59 -0.0
2,336,018 + HP15_2219 0.67 +0.6
2,336,023 + HP15_2219 0.68 -2.7
2,336,106 + HP15_2219 0.76 -2.6
2,336,114 - HP15_2219 0.77 +0.3
2,336,150 - HP15_2219 0.80 +1.4
2,336,191 - HP15_2219 0.84 +0.4
2,336,193 + HP15_2219 0.84 +0.3
2,336,193 + HP15_2219 0.84 -0.2
2,336,201 - HP15_2219 0.85 -0.9
2,336,201 - HP15_2219 0.85 +0.1
2,336,396 + -0.3
2,336,469 + HP15_2220 0.11 -0.0
2,336,645 - HP15_2220 0.38 +2.8
2,336,677 + HP15_2220 0.43 -0.2
2,336,756 + HP15_2220 0.55 +0.9
2,336,798 + HP15_2220 0.62 +0.1
2,336,932 + HP15_2220 0.82 -1.2
2,336,955 - HP15_2220 0.86 +0.1
2,336,975 - HP15_2220 0.89 +2.5
2,336,994 - -1.6
2,337,011 - -0.1
2,337,279 + HP15_2221 0.22 -1.0
2,337,287 - HP15_2221 0.23 -1.3
2,337,346 - HP15_2221 0.29 -0.5
2,337,346 - HP15_2221 0.29 -1.7
2,337,387 - HP15_2221 0.33 -0.6
2,337,421 - HP15_2221 0.36 +0.0
2,337,443 + HP15_2221 0.38 +0.7
2,337,571 - HP15_2221 0.50 -0.1
2,337,571 - HP15_2221 0.50 -2.1
2,337,576 - HP15_2221 0.50 -0.1
2,337,582 - HP15_2221 0.51 -0.1
2,337,625 + HP15_2221 0.55 -2.2
2,337,674 + HP15_2221 0.60 -2.3
2,337,760 - HP15_2221 0.68 -0.9
2,337,913 + HP15_2221 0.82 -0.8
2,337,921 - HP15_2221 0.83 -1.0
2,337,953 - HP15_2221 0.86 -0.7
2,337,985 - HP15_2221 0.89 -0.1

Or see this region's nucleotide sequence