Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02370 and PGA1_c02380 are separated by 32 nucleotides PGA1_c02380 and PGA1_c02390 are separated by 89 nucleotides PGA1_c02390 and PGA1_c02400 are separated by 79 nucleotides
PGA1_c02370: PGA1_c02370 - putative ribonuclease BN, at 214,041 to 215,150
_c02370
PGA1_c02380: PGA1_c02380 - hypothetical protein, at 215,183 to 216,454
_c02380
PGA1_c02390: PGA1_c02390 - transcriptional regulator, MerR family, at 216,544 to 216,948
_c02390
PGA1_c02400: PGA1_c02400 - putative major facilitator superfamily transporter, at 217,028 to 218,269
_c02400
Position (kb) 215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 214.209 kb on + strand, within PGA1_c02370 at 214.218 kb on + strand, within PGA1_c02370 at 214.244 kb on + strand, within PGA1_c02370 at 214.253 kb on + strand, within PGA1_c02370 at 214.279 kb on - strand, within PGA1_c02370 at 214.279 kb on - strand, within PGA1_c02370 at 214.281 kb on + strand, within PGA1_c02370 at 214.289 kb on - strand, within PGA1_c02370 at 214.303 kb on - strand, within PGA1_c02370 at 214.355 kb on + strand, within PGA1_c02370 at 214.393 kb on - strand, within PGA1_c02370 at 214.431 kb on + strand, within PGA1_c02370 at 214.441 kb on + strand, within PGA1_c02370 at 214.441 kb on + strand, within PGA1_c02370 at 214.441 kb on + strand, within PGA1_c02370 at 214.449 kb on - strand, within PGA1_c02370 at 214.472 kb on - strand, within PGA1_c02370 at 214.490 kb on + strand, within PGA1_c02370 at 214.498 kb on - strand, within PGA1_c02370 at 214.498 kb on - strand, within PGA1_c02370 at 214.517 kb on + strand, within PGA1_c02370 at 214.517 kb on + strand, within PGA1_c02370 at 214.517 kb on + strand, within PGA1_c02370 at 214.525 kb on - strand, within PGA1_c02370 at 214.532 kb on + strand, within PGA1_c02370 at 214.617 kb on + strand, within PGA1_c02370 at 214.637 kb on + strand, within PGA1_c02370 at 214.725 kb on + strand, within PGA1_c02370 at 214.754 kb on + strand, within PGA1_c02370 at 214.759 kb on - strand, within PGA1_c02370 at 214.767 kb on - strand, within PGA1_c02370 at 214.782 kb on + strand, within PGA1_c02370 at 214.782 kb on + strand, within PGA1_c02370 at 214.790 kb on - strand, within PGA1_c02370 at 214.828 kb on - strand, within PGA1_c02370 at 214.848 kb on + strand, within PGA1_c02370 at 214.851 kb on - strand, within PGA1_c02370 at 214.856 kb on - strand, within PGA1_c02370 at 214.856 kb on - strand, within PGA1_c02370 at 214.856 kb on - strand, within PGA1_c02370 at 214.870 kb on + strand, within PGA1_c02370 at 214.889 kb on - strand, within PGA1_c02370 at 214.891 kb on - strand, within PGA1_c02370 at 214.894 kb on + strand, within PGA1_c02370 at 214.939 kb on + strand, within PGA1_c02370 at 214.960 kb on + strand, within PGA1_c02370 at 214.973 kb on + strand, within PGA1_c02370 at 214.973 kb on + strand, within PGA1_c02370 at 214.981 kb on - strand, within PGA1_c02370 at 214.984 kb on + strand, within PGA1_c02370 at 215.077 kb on - strand at 215.102 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.159 kb on + strand at 215.159 kb on + strand at 215.159 kb on + strand at 215.159 kb on + strand at 215.164 kb on + strand at 215.164 kb on + strand at 215.164 kb on + strand at 215.164 kb on + strand at 215.164 kb on + strand at 215.167 kb on - strand at 215.167 kb on - strand at 215.172 kb on - strand at 215.174 kb on + strand at 215.230 kb on - strand at 215.307 kb on - strand at 215.355 kb on + strand, within PGA1_c02380 at 215.355 kb on + strand, within PGA1_c02380 at 215.373 kb on - strand, within PGA1_c02380 at 215.379 kb on - strand, within PGA1_c02380 at 215.447 kb on + strand, within PGA1_c02380 at 215.447 kb on + strand, within PGA1_c02380 at 215.447 kb on + strand, within PGA1_c02380 at 215.523 kb on - strand, within PGA1_c02380 at 215.523 kb on - strand, within PGA1_c02380 at 215.611 kb on - strand, within PGA1_c02380 at 215.681 kb on - strand, within PGA1_c02380 at 215.703 kb on + strand, within PGA1_c02380 at 215.703 kb on + strand, within PGA1_c02380 at 215.711 kb on - strand, within PGA1_c02380 at 215.752 kb on - strand, within PGA1_c02380 at 215.762 kb on - strand, within PGA1_c02380 at 215.811 kb on + strand, within PGA1_c02380 at 215.811 kb on + strand, within PGA1_c02380 at 215.811 kb on + strand, within PGA1_c02380 at 215.813 kb on - strand, within PGA1_c02380 at 215.906 kb on - strand, within PGA1_c02380 at 215.919 kb on + strand, within PGA1_c02380 at 215.947 kb on + strand, within PGA1_c02380 at 215.963 kb on + strand, within PGA1_c02380 at 215.990 kb on + strand, within PGA1_c02380 at 215.991 kb on + strand, within PGA1_c02380 at 215.998 kb on - strand, within PGA1_c02380 at 215.999 kb on - strand, within PGA1_c02380 at 216.002 kb on + strand, within PGA1_c02380 at 216.014 kb on + strand, within PGA1_c02380 at 216.014 kb on + strand, within PGA1_c02380 at 216.022 kb on - strand, within PGA1_c02380 at 216.022 kb on - strand, within PGA1_c02380 at 216.057 kb on + strand, within PGA1_c02380 at 216.075 kb on - strand, within PGA1_c02380 at 216.075 kb on - strand, within PGA1_c02380 at 216.090 kb on - strand, within PGA1_c02380 at 216.104 kb on + strand, within PGA1_c02380 at 216.152 kb on + strand, within PGA1_c02380 at 216.171 kb on + strand, within PGA1_c02380 at 216.171 kb on + strand, within PGA1_c02380 at 216.211 kb on + strand, within PGA1_c02380 at 216.316 kb on - strand, within PGA1_c02380 at 216.327 kb on - strand at 216.385 kb on + strand at 216.400 kb on + strand at 216.420 kb on + strand at 216.425 kb on - strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.458 kb on - strand at 216.458 kb on - strand at 216.458 kb on - strand at 216.458 kb on - strand at 216.494 kb on + strand at 216.573 kb on - strand at 216.601 kb on + strand, within PGA1_c02390 at 216.610 kb on + strand, within PGA1_c02390 at 216.623 kb on - strand, within PGA1_c02390 at 216.623 kb on - strand, within PGA1_c02390 at 216.646 kb on + strand, within PGA1_c02390 at 216.665 kb on - strand, within PGA1_c02390 at 216.708 kb on - strand, within PGA1_c02390 at 216.779 kb on + strand, within PGA1_c02390 at 216.858 kb on - strand, within PGA1_c02390 at 216.879 kb on + strand, within PGA1_c02390 at 216.887 kb on - strand, within PGA1_c02390 at 216.924 kb on - strand at 216.926 kb on + strand at 216.934 kb on - strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.992 kb on + strand at 216.998 kb on - strand at 216.998 kb on - strand at 216.998 kb on - strand at 217.000 kb on - strand at 217.000 kb on - strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.047 kb on - strand at 217.047 kb on - strand at 217.047 kb on - strand at 217.234 kb on - strand, within PGA1_c02400 at 217.243 kb on + strand, within PGA1_c02400 at 217.306 kb on - strand, within PGA1_c02400 at 217.336 kb on - strand, within PGA1_c02400 at 217.404 kb on - strand, within PGA1_c02400 at 217.450 kb on + strand, within PGA1_c02400 at 217.450 kb on + strand, within PGA1_c02400
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 214,209 + PGA1_c02370 0.15 +0.7 214,218 + PGA1_c02370 0.16 -2.0 214,244 + PGA1_c02370 0.18 -0.5 214,253 + PGA1_c02370 0.19 +1.5 214,279 - PGA1_c02370 0.21 -1.1 214,279 - PGA1_c02370 0.21 +0.5 214,281 + PGA1_c02370 0.22 -1.6 214,289 - PGA1_c02370 0.22 +0.1 214,303 - PGA1_c02370 0.24 -1.1 214,355 + PGA1_c02370 0.28 -1.5 214,393 - PGA1_c02370 0.32 -1.8 214,431 + PGA1_c02370 0.35 +0.9 214,441 + PGA1_c02370 0.36 -2.7 214,441 + PGA1_c02370 0.36 -1.4 214,441 + PGA1_c02370 0.36 +0.5 214,449 - PGA1_c02370 0.37 +0.3 214,472 - PGA1_c02370 0.39 +0.5 214,490 + PGA1_c02370 0.40 -1.1 214,498 - PGA1_c02370 0.41 +2.5 214,498 - PGA1_c02370 0.41 +0.7 214,517 + PGA1_c02370 0.43 -2.1 214,517 + PGA1_c02370 0.43 -0.0 214,517 + PGA1_c02370 0.43 +0.3 214,525 - PGA1_c02370 0.44 +1.9 214,532 + PGA1_c02370 0.44 -0.2 214,617 + PGA1_c02370 0.52 -1.1 214,637 + PGA1_c02370 0.54 -1.1 214,725 + PGA1_c02370 0.62 -1.1 214,754 + PGA1_c02370 0.64 +0.5 214,759 - PGA1_c02370 0.65 +1.7 214,767 - PGA1_c02370 0.65 +0.3 214,782 + PGA1_c02370 0.67 -2.1 214,782 + PGA1_c02370 0.67 -0.2 214,790 - PGA1_c02370 0.67 -3.2 214,828 - PGA1_c02370 0.71 -1.2 214,848 + PGA1_c02370 0.73 +1.3 214,851 - PGA1_c02370 0.73 +0.1 214,856 - PGA1_c02370 0.73 +0.8 214,856 - PGA1_c02370 0.73 -0.7 214,856 - PGA1_c02370 0.73 +0.4 214,870 + PGA1_c02370 0.75 +0.1 214,889 - PGA1_c02370 0.76 -1.4 214,891 - PGA1_c02370 0.77 +0.9 214,894 + PGA1_c02370 0.77 +1.1 214,939 + PGA1_c02370 0.81 +1.2 214,960 + PGA1_c02370 0.83 -0.0 214,973 + PGA1_c02370 0.84 +1.0 214,973 + PGA1_c02370 0.84 +0.5 214,981 - PGA1_c02370 0.85 -1.5 214,984 + PGA1_c02370 0.85 -0.2 215,077 - -0.5 215,102 + +2.2 215,107 + +1.1 215,107 + -0.0 215,107 + +1.3 215,107 + +0.5 215,107 + -0.1 215,107 + +2.1 215,107 + +0.4 215,107 + +1.6 215,107 + -1.7 215,107 + +2.3 215,107 + -1.7 215,107 + -0.7 215,107 + +0.1 215,115 - -1.7 215,115 - -0.9 215,115 - -2.3 215,115 - +1.8 215,115 - -0.4 215,115 - -0.3 215,159 + +0.6 215,159 + -0.7 215,159 + +0.0 215,159 + +0.6 215,164 + +0.1 215,164 + +0.3 215,164 + -2.5 215,164 + +1.1 215,164 + -0.2 215,167 - -0.7 215,167 - +0.1 215,172 - +0.3 215,174 + -1.0 215,230 - -0.6 215,307 - +1.1 215,355 + PGA1_c02380 0.14 -0.9 215,355 + PGA1_c02380 0.14 -0.6 215,373 - PGA1_c02380 0.15 +0.1 215,379 - PGA1_c02380 0.15 -0.3 215,447 + PGA1_c02380 0.21 -0.9 215,447 + PGA1_c02380 0.21 -0.1 215,447 + PGA1_c02380 0.21 -0.7 215,523 - PGA1_c02380 0.27 +0.2 215,523 - PGA1_c02380 0.27 -1.1 215,611 - PGA1_c02380 0.34 -1.2 215,681 - PGA1_c02380 0.39 -2.0 215,703 + PGA1_c02380 0.41 -0.5 215,703 + PGA1_c02380 0.41 +0.5 215,711 - PGA1_c02380 0.42 -1.7 215,752 - PGA1_c02380 0.45 -0.2 215,762 - PGA1_c02380 0.46 +0.5 215,811 + PGA1_c02380 0.49 -0.2 215,811 + PGA1_c02380 0.49 -1.4 215,811 + PGA1_c02380 0.49 +1.1 215,813 - PGA1_c02380 0.50 -2.1 215,906 - PGA1_c02380 0.57 -0.1 215,919 + PGA1_c02380 0.58 +0.5 215,947 + PGA1_c02380 0.60 +1.2 215,963 + PGA1_c02380 0.61 -1.5 215,990 + PGA1_c02380 0.63 -0.1 215,991 + PGA1_c02380 0.64 +0.5 215,998 - PGA1_c02380 0.64 -1.2 215,999 - PGA1_c02380 0.64 -0.2 216,002 + PGA1_c02380 0.64 -1.2 216,014 + PGA1_c02380 0.65 +1.7 216,014 + PGA1_c02380 0.65 -0.2 216,022 - PGA1_c02380 0.66 -1.8 216,022 - PGA1_c02380 0.66 -0.4 216,057 + PGA1_c02380 0.69 -0.3 216,075 - PGA1_c02380 0.70 -0.6 216,075 - PGA1_c02380 0.70 +0.6 216,090 - PGA1_c02380 0.71 -1.1 216,104 + PGA1_c02380 0.72 +2.1 216,152 + PGA1_c02380 0.76 -2.1 216,171 + PGA1_c02380 0.78 -0.1 216,171 + PGA1_c02380 0.78 -1.1 216,211 + PGA1_c02380 0.81 +1.1 216,316 - PGA1_c02380 0.89 -0.4 216,327 - -1.2 216,385 + -1.2 216,400 + +1.4 216,420 + -2.4 216,425 - -0.5 216,450 + +0.2 216,450 + -1.8 216,450 + -1.0 216,450 + -0.9 216,450 + +0.4 216,450 + +2.1 216,450 + +0.5 216,458 - +0.3 216,458 - -0.5 216,458 - +0.5 216,458 - -0.8 216,494 + +0.1 216,573 - +1.0 216,601 + PGA1_c02390 0.14 -1.5 216,610 + PGA1_c02390 0.16 -2.2 216,623 - PGA1_c02390 0.20 -1.4 216,623 - PGA1_c02390 0.20 -1.9 216,646 + PGA1_c02390 0.25 -1.7 216,665 - PGA1_c02390 0.30 +0.1 216,708 - PGA1_c02390 0.40 -1.5 216,779 + PGA1_c02390 0.58 +0.5 216,858 - PGA1_c02390 0.78 +1.3 216,879 + PGA1_c02390 0.83 +0.9 216,887 - PGA1_c02390 0.85 -0.1 216,924 - +0.1 216,926 + -0.9 216,934 - -1.9 216,990 + +1.2 216,990 + +0.2 216,990 + +2.1 216,990 + -0.2 216,990 + -0.1 216,990 + -0.5 216,990 + -1.6 216,990 + -0.1 216,992 + -0.3 216,998 - -0.9 216,998 - -1.5 216,998 - +0.6 217,000 - -0.9 217,000 - +2.1 217,039 + -1.5 217,039 + -1.1 217,039 + -0.1 217,047 - +1.9 217,047 - +1.1 217,047 - -1.1 217,234 - PGA1_c02400 0.17 -0.7 217,243 + PGA1_c02400 0.17 +0.2 217,306 - PGA1_c02400 0.22 -0.2 217,336 - PGA1_c02400 0.25 +0.1 217,404 - PGA1_c02400 0.30 -0.2 217,450 + PGA1_c02400 0.34 +1.2 217,450 + PGA1_c02400 0.34 +0.1
Or see this region's nucleotide sequence