Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_216 and HP15_217 are separated by 66 nucleotides HP15_217 and HP15_218 are separated by 122 nucleotides HP15_218 and HP15_219 are separated by 20 nucleotides HP15_219 and HP15_220 are separated by 150 nucleotides
HP15_216: HP15_216 - DNA damage response protein (yhgF like) <small>(from data)</small>, at 203,304 to 205,643
_216
HP15_217: HP15_217 - glutamate--cysteine ligase, at 205,710 to 207,263
_217
HP15_218: HP15_218 - conserved hypothetical protein, at 207,386 to 207,601
_218
HP15_219: HP15_219 - flagellar basal body-associated protein FliL, at 207,622 to 208,071
_219
HP15_220: HP15_220 - disulfide bond formation protein B, at 208,222 to 208,629
_220
Position (kb) 205
206
207
208 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 204.749 kb on + strand, within HP15_216 at 204.792 kb on + strand, within HP15_216 at 204.795 kb on - strand, within HP15_216 at 204.827 kb on + strand, within HP15_216 at 204.911 kb on + strand, within HP15_216 at 205.107 kb on - strand, within HP15_216 at 205.205 kb on - strand, within HP15_216 at 205.234 kb on - strand, within HP15_216 at 205.236 kb on - strand, within HP15_216 at 205.352 kb on + strand, within HP15_216 at 205.360 kb on - strand, within HP15_216 at 205.360 kb on - strand, within HP15_216 at 205.361 kb on - strand, within HP15_216 at 205.375 kb on + strand, within HP15_216 at 205.409 kb on + strand, within HP15_216 at 205.417 kb on - strand at 205.615 kb on - strand at 205.639 kb on + strand at 205.656 kb on + strand at 205.721 kb on - strand at 207.277 kb on - strand at 207.427 kb on + strand, within HP15_218 at 207.455 kb on - strand, within HP15_218 at 207.560 kb on - strand, within HP15_218 at 208.110 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 204,749 + HP15_216 0.62 -0.5 204,792 + HP15_216 0.64 -0.2 204,795 - HP15_216 0.64 -6.1 204,827 + HP15_216 0.65 -0.4 204,911 + HP15_216 0.69 +0.3 205,107 - HP15_216 0.77 -3.1 205,205 - HP15_216 0.81 -2.9 205,234 - HP15_216 0.82 -4.3 205,236 - HP15_216 0.83 -4.2 205,352 + HP15_216 0.88 -1.6 205,360 - HP15_216 0.88 -1.8 205,360 - HP15_216 0.88 -5.2 205,361 - HP15_216 0.88 -2.6 205,375 + HP15_216 0.89 -0.5 205,409 + HP15_216 0.90 -0.4 205,417 - -2.2 205,615 - -3.4 205,639 + +2.5 205,656 + -1.5 205,721 - -0.8 207,277 - -0.7 207,427 + HP15_218 0.19 -0.3 207,455 - HP15_218 0.32 +0.2 207,560 - HP15_218 0.81 -0.3 208,110 + +0.9
Or see this region's nucleotide sequence