Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02230

Experiment: m.b. Fusidic 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt PGA1_c02230: PGA1_c02230 - hypothetical protein, at 202,473 to 202,652 _c02230 Position (kb) 202 203Strain fitness (log2 ratio) -2 -1 0 1 2 3at 201.494 kb on + strandat 201.502 kb on - strandat 201.525 kb on + strandat 201.533 kb on - strandat 201.533 kb on - strandat 201.543 kb on - strandat 201.551 kb on - strandat 201.577 kb on - strandat 201.698 kb on + strandat 201.698 kb on + strandat 201.704 kb on + strandat 201.722 kb on - strandat 201.723 kb on + strandat 201.908 kb on - strandat 201.929 kb on + strandat 201.929 kb on + strandat 201.937 kb on - strandat 201.937 kb on - strandat 201.965 kb on + strandat 201.999 kb on - strandat 202.057 kb on - strandat 202.083 kb on - strandat 202.246 kb on - strandat 202.297 kb on - strandat 202.297 kb on - strandat 202.350 kb on - strandat 202.362 kb on + strandat 202.370 kb on - strandat 202.377 kb on + strandat 202.394 kb on + strandat 202.413 kb on - strandat 202.471 kb on + strandat 202.481 kb on - strandat 202.483 kb on + strandat 202.486 kb on - strandat 202.494 kb on - strand, within PGA1_c02230at 202.494 kb on - strand, within PGA1_c02230at 202.513 kb on - strand, within PGA1_c02230at 202.528 kb on + strand, within PGA1_c02230at 202.528 kb on + strand, within PGA1_c02230at 202.536 kb on - strand, within PGA1_c02230at 202.536 kb on - strand, within PGA1_c02230at 202.536 kb on - strand, within PGA1_c02230at 202.549 kb on - strand, within PGA1_c02230at 202.565 kb on - strand, within PGA1_c02230at 202.595 kb on + strand, within PGA1_c02230at 202.638 kb on - strandat 202.643 kb on - strandat 202.716 kb on - strandat 202.730 kb on + strandat 202.731 kb on + strandat 202.748 kb on + strandat 202.756 kb on - strandat 202.758 kb on + strandat 202.759 kb on + strandat 202.767 kb on - strandat 202.767 kb on - strandat 202.808 kb on - strandat 202.929 kb on + strandat 202.981 kb on - strandat 202.991 kb on - strandat 203.042 kb on - strandat 203.042 kb on - strandat 203.058 kb on - strandat 203.065 kb on + strandat 203.069 kb on + strandat 203.074 kb on + strandat 203.099 kb on - strandat 203.101 kb on - strandat 203.106 kb on + strandat 203.118 kb on + strandat 203.118 kb on + strandat 203.118 kb on + strandat 203.138 kb on - strandat 203.152 kb on + strandat 203.179 kb on - strandat 203.211 kb on + strandat 203.218 kb on + strandat 203.218 kb on + strandat 203.221 kb on + strandat 203.224 kb on - strandat 203.270 kb on + strandat 203.273 kb on - strandat 203.278 kb on - strandat 203.385 kb on + strandat 203.393 kb on - strandat 203.393 kb on - strandat 203.393 kb on - strandat 203.406 kb on + strandat 203.462 kb on + strandat 203.462 kb on + strandat 203.483 kb on + strandat 203.562 kb on + strandat 203.566 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
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201,494 + -1.4
201,502 - -1.2
201,525 + -0.6
201,533 - -0.2
201,533 - -0.7
201,543 - +0.2
201,551 - -0.7
201,577 - -0.2
201,698 + -0.2
201,698 + -1.2
201,704 + -0.7
201,722 - +0.7
201,723 + -1.4
201,908 - +0.1
201,929 + +1.3
201,929 + -2.1
201,937 - +0.7
201,937 - -1.4
201,965 + -2.1
201,999 - -0.4
202,057 - -0.9
202,083 - +3.4
202,246 - -1.1
202,297 - +0.4
202,297 - -0.5
202,350 - +2.7
202,362 + +0.2
202,370 - +0.6
202,377 + +0.2
202,394 + +0.9
202,413 - +1.1
202,471 + -0.7
202,481 - -1.2
202,483 + -0.9
202,486 - -1.1
202,494 - PGA1_c02230 0.12 -1.8
202,494 - PGA1_c02230 0.12 -1.4
202,513 - PGA1_c02230 0.22 -1.9
202,528 + PGA1_c02230 0.31 -1.0
202,528 + PGA1_c02230 0.31 +0.5
202,536 - PGA1_c02230 0.35 -0.2
202,536 - PGA1_c02230 0.35 -0.5
202,536 - PGA1_c02230 0.35 -2.1
202,549 - PGA1_c02230 0.42 -0.2
202,565 - PGA1_c02230 0.51 +0.7
202,595 + PGA1_c02230 0.68 -0.1
202,638 - +1.3
202,643 - +0.8
202,716 - -0.4
202,730 + -0.5
202,731 + +0.9
202,748 + -1.6
202,756 - +0.2
202,758 + +0.8
202,759 + -1.0
202,767 - -0.5
202,767 - +0.1
202,808 - +0.3
202,929 + -0.7
202,981 - +0.4
202,991 - +0.8
203,042 - +1.9
203,042 - -1.1
203,058 - -0.1
203,065 + +1.3
203,069 + +0.1
203,074 + -0.6
203,099 - -0.5
203,101 - -0.6
203,106 + -2.4
203,118 + -0.3
203,118 + -1.1
203,118 + -0.9
203,138 - +0.3
203,152 + +1.9
203,179 - +1.4
203,211 + +1.3
203,218 + +1.1
203,218 + -1.9
203,221 + -0.7
203,224 - -1.6
203,270 + +2.1
203,273 - +0.6
203,278 - +0.2
203,385 + +0.5
203,393 - +1.8
203,393 - +0.4
203,393 - -1.0
203,406 + -0.4
203,462 + +0.3
203,462 + -2.6
203,483 + -0.5
203,562 + -1.1
203,566 + -1.4

Or see this region's nucleotide sequence