Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1988 and HP15_1989 overlap by 4 nucleotides HP15_1989 and HP15_1990 overlap by 1 nucleotides HP15_1990 and HP15_1991 overlap by 4 nucleotides HP15_1991 and HP15_1992 are separated by 3 nucleotides HP15_1992 and HP15_1993 are separated by 77 nucleotides HP15_1993 and HP15_1994 are separated by 17 nucleotides
HP15_1988: HP15_1988 - hypothetical protein, at 2,098,935 to 2,099,276
_1988
HP15_1989: HP15_1989 - hypothetical protein, at 2,099,273 to 2,099,584
_1989
HP15_1990: HP15_1990 - hypothetical protein, at 2,099,584 to 2,099,829
_1990
HP15_1991: HP15_1991 - conserved hypothetical protein, at 2,099,826 to 2,100,191
_1991
HP15_1992: HP15_1992 - conserved hypothetical protein, at 2,100,195 to 2,101,061
_1992
HP15_1993: HP15_1993 - exonuclease RNase T and DNA polymerase III, at 2,101,139 to 2,101,711
_1993
HP15_1994: HP15_1994 - hypothetical protein, at 2,101,729 to 2,102,124
_1994
Position (kb)
2100
2101
2102 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2099.226 kb on - strand, within HP15_1988 at 2099.232 kb on - strand, within HP15_1988 at 2099.241 kb on - strand, within HP15_1988 at 2099.270 kb on - strand at 2099.278 kb on - strand at 2099.649 kb on - strand, within HP15_1990 at 2099.741 kb on - strand, within HP15_1990 at 2099.741 kb on - strand, within HP15_1990 at 2099.787 kb on - strand, within HP15_1990 at 2099.799 kb on - strand, within HP15_1990 at 2099.853 kb on - strand at 2099.943 kb on - strand, within HP15_1991 at 2099.953 kb on - strand, within HP15_1991 at 2099.953 kb on - strand, within HP15_1991 at 2100.006 kb on - strand, within HP15_1991 at 2100.218 kb on + strand at 2100.239 kb on + strand at 2100.262 kb on - strand at 2100.305 kb on + strand, within HP15_1992 at 2100.442 kb on - strand, within HP15_1992 at 2100.442 kb on - strand, within HP15_1992 at 2100.442 kb on - strand, within HP15_1992 at 2100.519 kb on - strand, within HP15_1992 at 2100.529 kb on + strand, within HP15_1992 at 2100.580 kb on + strand, within HP15_1992 at 2100.615 kb on - strand, within HP15_1992 at 2100.670 kb on - strand, within HP15_1992 at 2100.691 kb on + strand, within HP15_1992 at 2100.848 kb on - strand, within HP15_1992 at 2100.894 kb on - strand, within HP15_1992 at 2101.014 kb on - strand at 2101.341 kb on + strand, within HP15_1993 at 2101.355 kb on - strand, within HP15_1993 at 2101.402 kb on - strand, within HP15_1993 at 2101.412 kb on - strand, within HP15_1993 at 2101.417 kb on - strand, within HP15_1993 at 2101.502 kb on - strand, within HP15_1993 at 2101.591 kb on - strand, within HP15_1993 at 2101.670 kb on - strand at 2101.670 kb on - strand at 2101.670 kb on - strand at 2101.680 kb on - strand at 2101.773 kb on + strand, within HP15_1994 at 2101.781 kb on - strand, within HP15_1994 at 2101.799 kb on - strand, within HP15_1994 at 2101.822 kb on - strand, within HP15_1994 at 2101.927 kb on - strand, within HP15_1994 at 2101.929 kb on - strand, within HP15_1994 at 2101.971 kb on + strand, within HP15_1994
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 2,099,226 - HP15_1988 0.85 +0.8 2,099,232 - HP15_1988 0.87 +0.4 2,099,241 - HP15_1988 0.89 +0.6 2,099,270 - +1.6 2,099,278 - -0.2 2,099,649 - HP15_1990 0.26 +1.5 2,099,741 - HP15_1990 0.64 +1.5 2,099,741 - HP15_1990 0.64 +0.7 2,099,787 - HP15_1990 0.83 +1.3 2,099,799 - HP15_1990 0.87 +1.3 2,099,853 - +0.2 2,099,943 - HP15_1991 0.32 +1.3 2,099,953 - HP15_1991 0.35 +1.3 2,099,953 - HP15_1991 0.35 +0.7 2,100,006 - HP15_1991 0.49 +0.6 2,100,218 + +3.5 2,100,239 + +0.3 2,100,262 - +0.8 2,100,305 + HP15_1992 0.13 +3.1 2,100,442 - HP15_1992 0.28 +0.3 2,100,442 - HP15_1992 0.28 +0.8 2,100,442 - HP15_1992 0.28 +1.0 2,100,519 - HP15_1992 0.37 +0.3 2,100,529 + HP15_1992 0.39 +1.7 2,100,580 + HP15_1992 0.44 +1.1 2,100,615 - HP15_1992 0.48 +0.5 2,100,670 - HP15_1992 0.55 +1.0 2,100,691 + HP15_1992 0.57 +1.8 2,100,848 - HP15_1992 0.75 +0.9 2,100,894 - HP15_1992 0.81 +1.5 2,101,014 - +0.4 2,101,341 + HP15_1993 0.35 +0.9 2,101,355 - HP15_1993 0.38 -1.1 2,101,402 - HP15_1993 0.46 +0.1 2,101,412 - HP15_1993 0.48 -0.5 2,101,417 - HP15_1993 0.49 +1.0 2,101,502 - HP15_1993 0.63 +2.2 2,101,591 - HP15_1993 0.79 -1.2 2,101,670 - -0.2 2,101,670 - -2.1 2,101,670 - -1.4 2,101,680 - -0.7 2,101,773 + HP15_1994 0.11 +0.3 2,101,781 - HP15_1994 0.13 +0.3 2,101,799 - HP15_1994 0.18 +0.7 2,101,822 - HP15_1994 0.23 -0.7 2,101,927 - HP15_1994 0.50 -0.1 2,101,929 - HP15_1994 0.51 +0.2 2,101,971 + HP15_1994 0.61 +0.9
Or see this region's nucleotide sequence