Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_198 and HP15_199 overlap by 11 nucleotides HP15_199 and HP15_200 are separated by 123 nucleotides HP15_200 and HP15_201 are separated by 89 nucleotides
HP15_198: HP15_198 - LrgA protein, at 185,682 to 186,041
_198
HP15_199: HP15_199 - LrgB family protein, at 186,031 to 186,753
_199
HP15_200: HP15_200 - peptide ABC transporter, periplasmic peptide-binding protein, at 186,877 to 188,472
_200
HP15_201: HP15_201 - peptide transport system permease ABC transporter protein, at 188,562 to 189,599
_201
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.979 kb on + strand, within HP15_198 at 186.054 kb on + strand at 186.054 kb on + strand at 186.085 kb on + strand at 186.112 kb on - strand, within HP15_199 at 186.157 kb on - strand, within HP15_199 at 186.161 kb on + strand, within HP15_199 at 186.420 kb on - strand, within HP15_199 at 186.429 kb on + strand, within HP15_199 at 186.430 kb on - strand, within HP15_199 at 186.517 kb on - strand, within HP15_199 at 186.565 kb on - strand, within HP15_199 at 186.584 kb on - strand, within HP15_199 at 186.627 kb on - strand, within HP15_199 at 186.721 kb on + strand at 186.812 kb on + strand at 186.812 kb on + strand at 187.018 kb on - strand at 187.055 kb on - strand, within HP15_200 at 187.079 kb on + strand, within HP15_200 at 187.079 kb on + strand, within HP15_200 at 187.185 kb on + strand, within HP15_200 at 187.237 kb on + strand, within HP15_200 at 187.247 kb on + strand, within HP15_200 at 187.319 kb on + strand, within HP15_200 at 187.532 kb on - strand, within HP15_200 at 187.555 kb on + strand, within HP15_200 at 187.756 kb on - strand, within HP15_200 at 187.895 kb on + strand, within HP15_200 at 187.902 kb on - strand, within HP15_200 at 187.929 kb on + strand, within HP15_200 at 187.937 kb on - strand, within HP15_200 at 187.947 kb on + strand, within HP15_200 at 188.072 kb on - strand, within HP15_200 at 188.096 kb on - strand, within HP15_200 at 188.100 kb on + strand, within HP15_200 at 188.100 kb on + strand, within HP15_200 at 188.103 kb on - strand, within HP15_200 at 188.161 kb on + strand, within HP15_200 at 188.219 kb on + strand, within HP15_200 at 188.224 kb on + strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.309 kb on - strand, within HP15_200 at 188.309 kb on - strand, within HP15_200 at 188.375 kb on + strand at 188.383 kb on - strand at 188.441 kb on + strand at 188.449 kb on - strand at 188.501 kb on - strand at 188.538 kb on - strand at 188.552 kb on - strand at 188.634 kb on + strand at 188.658 kb on + strand at 188.684 kb on + strand, within HP15_201 at 188.956 kb on - strand, within HP15_201 at 189.013 kb on + strand, within HP15_201 at 189.013 kb on - strand, within HP15_201 at 189.021 kb on - strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.221 kb on + strand, within HP15_201 at 189.239 kb on + strand, within HP15_201 at 189.293 kb on + strand, within HP15_201 at 189.325 kb on - strand, within HP15_201 at 189.338 kb on + strand, within HP15_201 at 189.344 kb on - strand, within HP15_201 at 189.393 kb on - strand, within HP15_201 at 189.441 kb on + strand, within HP15_201
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 185,979 + HP15_198 0.82 -0.1 186,054 + +0.5 186,054 + -0.9 186,085 + +0.4 186,112 - HP15_199 0.11 -0.7 186,157 - HP15_199 0.17 +0.0 186,161 + HP15_199 0.18 -0.3 186,420 - HP15_199 0.54 +0.0 186,429 + HP15_199 0.55 +0.1 186,430 - HP15_199 0.55 +0.1 186,517 - HP15_199 0.67 +1.4 186,565 - HP15_199 0.74 -1.3 186,584 - HP15_199 0.76 -0.3 186,627 - HP15_199 0.82 -0.2 186,721 + -0.7 186,812 + +1.0 186,812 + +0.7 187,018 - +0.9 187,055 - HP15_200 0.11 +0.4 187,079 + HP15_200 0.13 +1.6 187,079 + HP15_200 0.13 +1.0 187,185 + HP15_200 0.19 +1.0 187,237 + HP15_200 0.23 +0.4 187,247 + HP15_200 0.23 +2.1 187,319 + HP15_200 0.28 +1.4 187,532 - HP15_200 0.41 +0.7 187,555 + HP15_200 0.42 +0.4 187,756 - HP15_200 0.55 +0.4 187,895 + HP15_200 0.64 +0.2 187,902 - HP15_200 0.64 +1.4 187,929 + HP15_200 0.66 +0.7 187,937 - HP15_200 0.66 +0.6 187,947 + HP15_200 0.67 -0.5 188,072 - HP15_200 0.75 +0.4 188,096 - HP15_200 0.76 +0.7 188,100 + HP15_200 0.77 +0.9 188,100 + HP15_200 0.77 +1.5 188,103 - HP15_200 0.77 +1.0 188,161 + HP15_200 0.80 -0.7 188,219 + HP15_200 0.84 +0.6 188,224 + HP15_200 0.84 +0.1 188,232 - HP15_200 0.85 -2.3 188,232 - HP15_200 0.85 +0.4 188,232 - HP15_200 0.85 +0.9 188,309 - HP15_200 0.90 +1.6 188,309 - HP15_200 0.90 +0.8 188,375 + +0.9 188,383 - -0.7 188,441 + +0.7 188,449 - +0.9 188,501 - +0.5 188,538 - +1.1 188,552 - +0.5 188,634 + +1.0 188,658 + +0.4 188,684 + HP15_201 0.12 +0.8 188,956 - HP15_201 0.38 +0.6 189,013 + HP15_201 0.43 +1.3 189,013 - HP15_201 0.43 +1.5 189,021 - HP15_201 0.44 +0.7 189,166 + HP15_201 0.58 +2.3 189,166 + HP15_201 0.58 +1.1 189,174 - HP15_201 0.59 +1.8 189,174 - HP15_201 0.59 -0.1 189,221 + HP15_201 0.63 +1.1 189,239 + HP15_201 0.65 +0.8 189,293 + HP15_201 0.70 +1.0 189,325 - HP15_201 0.74 +2.7 189,338 + HP15_201 0.75 +0.7 189,344 - HP15_201 0.75 +0.8 189,393 - HP15_201 0.80 +0.7 189,441 + HP15_201 0.85 +1.0
Or see this region's nucleotide sequence