Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_197 and HP15_198 are separated by 75 nucleotides HP15_198 and HP15_199 overlap by 11 nucleotides HP15_199 and HP15_200 are separated by 123 nucleotides
HP15_197: HP15_197 - YaeQ family protein, at 185,061 to 185,606
_197
HP15_198: HP15_198 - LrgA protein, at 185,682 to 186,041
_198
HP15_199: HP15_199 - LrgB family protein, at 186,031 to 186,753
_199
HP15_200: HP15_200 - peptide ABC transporter, periplasmic peptide-binding protein, at 186,877 to 188,472
_200
Position (kb) 186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 185.059 kb on + strand at 185.064 kb on + strand at 185.072 kb on - strand at 185.072 kb on - strand at 185.089 kb on - strand at 185.155 kb on - strand, within HP15_197 at 185.185 kb on + strand, within HP15_197 at 185.186 kb on + strand, within HP15_197 at 185.187 kb on - strand, within HP15_197 at 185.265 kb on + strand, within HP15_197 at 185.290 kb on + strand, within HP15_197 at 185.322 kb on - strand, within HP15_197 at 185.324 kb on - strand, within HP15_197 at 185.351 kb on + strand, within HP15_197 at 185.351 kb on + strand, within HP15_197 at 185.421 kb on + strand, within HP15_197 at 185.462 kb on + strand, within HP15_197 at 185.574 kb on - strand at 185.586 kb on - strand at 185.628 kb on + strand at 185.628 kb on + strand at 185.628 kb on + strand at 185.628 kb on + strand at 185.628 kb on + strand at 185.636 kb on + strand at 185.636 kb on + strand at 185.636 kb on - strand at 185.636 kb on - strand at 185.640 kb on + strand at 185.644 kb on - strand at 185.654 kb on - strand at 185.672 kb on + strand at 185.680 kb on - strand at 185.805 kb on - strand, within HP15_198 at 185.847 kb on + strand, within HP15_198 at 185.848 kb on + strand, within HP15_198 at 185.979 kb on + strand, within HP15_198 at 186.054 kb on + strand at 186.054 kb on + strand at 186.085 kb on + strand at 186.112 kb on - strand, within HP15_199 at 186.157 kb on - strand, within HP15_199 at 186.161 kb on + strand, within HP15_199 at 186.420 kb on - strand, within HP15_199 at 186.429 kb on + strand, within HP15_199 at 186.430 kb on - strand, within HP15_199 at 186.517 kb on - strand, within HP15_199 at 186.565 kb on - strand, within HP15_199 at 186.584 kb on - strand, within HP15_199 at 186.627 kb on - strand, within HP15_199 at 186.721 kb on + strand at 186.812 kb on + strand at 186.812 kb on + strand at 187.018 kb on - strand at 187.055 kb on - strand, within HP15_200 at 187.079 kb on + strand, within HP15_200 at 187.079 kb on + strand, within HP15_200 at 187.185 kb on + strand, within HP15_200 at 187.237 kb on + strand, within HP15_200 at 187.247 kb on + strand, within HP15_200 at 187.319 kb on + strand, within HP15_200 at 187.532 kb on - strand, within HP15_200 at 187.555 kb on + strand, within HP15_200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 185,059 + +0.3 185,064 + +0.1 185,072 - -0.7 185,072 - +3.2 185,089 - -0.5 185,155 - HP15_197 0.17 +0.1 185,185 + HP15_197 0.23 -0.3 185,186 + HP15_197 0.23 +3.2 185,187 - HP15_197 0.23 -2.7 185,265 + HP15_197 0.37 +1.1 185,290 + HP15_197 0.42 -3.0 185,322 - HP15_197 0.48 -0.2 185,324 - HP15_197 0.48 -0.8 185,351 + HP15_197 0.53 +0.1 185,351 + HP15_197 0.53 -0.6 185,421 + HP15_197 0.66 -0.1 185,462 + HP15_197 0.73 +0.1 185,574 - -0.9 185,586 - +0.5 185,628 + -0.7 185,628 + +0.2 185,628 + +0.4 185,628 + +0.4 185,628 + -0.1 185,636 + +0.9 185,636 + -0.2 185,636 - -0.1 185,636 - +2.4 185,640 + +0.6 185,644 - -0.2 185,654 - -0.4 185,672 + -1.4 185,680 - -0.2 185,805 - HP15_198 0.34 -0.7 185,847 + HP15_198 0.46 -0.6 185,848 + HP15_198 0.46 +0.7 185,979 + HP15_198 0.82 -0.1 186,054 + +0.5 186,054 + -0.9 186,085 + +0.4 186,112 - HP15_199 0.11 -0.7 186,157 - HP15_199 0.17 +0.0 186,161 + HP15_199 0.18 -0.3 186,420 - HP15_199 0.54 +0.0 186,429 + HP15_199 0.55 +0.1 186,430 - HP15_199 0.55 +0.1 186,517 - HP15_199 0.67 +1.4 186,565 - HP15_199 0.74 -1.3 186,584 - HP15_199 0.76 -0.3 186,627 - HP15_199 0.82 -0.2 186,721 + -0.7 186,812 + +1.0 186,812 + +0.7 187,018 - +0.9 187,055 - HP15_200 0.11 +0.4 187,079 + HP15_200 0.13 +1.6 187,079 + HP15_200 0.13 +1.0 187,185 + HP15_200 0.19 +1.0 187,237 + HP15_200 0.23 +0.4 187,247 + HP15_200 0.23 +2.1 187,319 + HP15_200 0.28 +1.4 187,532 - HP15_200 0.41 +0.7 187,555 + HP15_200 0.42 +0.4
Or see this region's nucleotide sequence