Strain Fitness in Marinobacter adhaerens HP15 around HP15_1914

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1913 and HP15_1914 overlap by 4 nucleotidesHP15_1914 and HP15_1915 are separated by 2 nucleotides HP15_1913: HP15_1913 - glycosyltransferase, at 2,026,798 to 2,027,919 _1913 HP15_1914: HP15_1914 - asparagine synthase, glutamine-hydrolyzing, at 2,027,916 to 2,029,814 _1914 HP15_1915: HP15_1915 - glycosyl transferase, group 1, at 2,029,817 to 2,030,968 _1915 Position (kb) 2027 2028 2029 2030Strain fitness (log2 ratio) -2 -1 0 1at 2026.916 kb on - strand, within HP15_1913at 2027.022 kb on - strand, within HP15_1913at 2027.048 kb on + strand, within HP15_1913at 2027.124 kb on - strand, within HP15_1913at 2027.133 kb on - strand, within HP15_1913at 2027.148 kb on + strand, within HP15_1913at 2027.296 kb on - strand, within HP15_1913at 2027.350 kb on + strand, within HP15_1913at 2027.355 kb on + strand, within HP15_1913at 2027.358 kb on - strand, within HP15_1913at 2027.399 kb on - strand, within HP15_1913at 2027.491 kb on + strand, within HP15_1913at 2027.501 kb on - strand, within HP15_1913at 2027.506 kb on - strand, within HP15_1913at 2027.542 kb on - strandat 2027.617 kb on + strand, within HP15_1913at 2027.625 kb on - strand, within HP15_1913at 2027.652 kb on - strand, within HP15_1913at 2027.726 kb on - strand, within HP15_1913at 2027.856 kb on + strandat 2027.976 kb on - strandat 2028.005 kb on + strandat 2028.027 kb on + strandat 2028.225 kb on - strand, within HP15_1914at 2028.322 kb on + strand, within HP15_1914at 2028.587 kb on + strand, within HP15_1914at 2028.803 kb on + strand, within HP15_1914at 2028.968 kb on - strand, within HP15_1914at 2028.987 kb on + strand, within HP15_1914at 2029.109 kb on + strand, within HP15_1914at 2029.121 kb on + strand, within HP15_1914at 2029.121 kb on + strand, within HP15_1914at 2029.129 kb on - strand, within HP15_1914at 2029.233 kb on - strand, within HP15_1914at 2029.444 kb on + strand, within HP15_1914at 2029.661 kb on - strandat 2029.688 kb on - strandat 2029.728 kb on + strandat 2029.747 kb on + strandat 2029.964 kb on - strand, within HP15_1915at 2030.029 kb on - strand, within HP15_1915at 2030.228 kb on - strand, within HP15_1915at 2030.271 kb on + strand, within HP15_1915at 2030.285 kb on + strand, within HP15_1915at 2030.300 kb on - strand, within HP15_1915at 2030.530 kb on - strand, within HP15_1915at 2030.531 kb on + strand, within HP15_1915at 2030.562 kb on + strand, within HP15_1915at 2030.587 kb on + strand, within HP15_1915at 2030.612 kb on + strand, within HP15_1915at 2030.698 kb on - strandat 2030.714 kb on + strand, within HP15_1915at 2030.812 kb on - strand, within HP15_1915

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,026,916 - HP15_1913 0.11 +0.2
2,027,022 - HP15_1913 0.20 +1.1
2,027,048 + HP15_1913 0.22 -0.5
2,027,124 - HP15_1913 0.29 -1.6
2,027,133 - HP15_1913 0.30 +0.2
2,027,148 + HP15_1913 0.31 -2.7
2,027,296 - HP15_1913 0.44 +0.4
2,027,350 + HP15_1913 0.49 -0.3
2,027,355 + HP15_1913 0.50 +0.3
2,027,358 - HP15_1913 0.50 +0.6
2,027,399 - HP15_1913 0.54 +0.3
2,027,491 + HP15_1913 0.62 +0.1
2,027,501 - HP15_1913 0.63 +0.0
2,027,506 - HP15_1913 0.63 +0.3
2,027,542 - +1.5
2,027,617 + HP15_1913 0.73 +0.1
2,027,625 - HP15_1913 0.74 +0.1
2,027,652 - HP15_1913 0.76 -0.1
2,027,726 - HP15_1913 0.83 -1.0
2,027,856 + -0.2
2,027,976 - -0.0
2,028,005 + -1.5
2,028,027 + +0.1
2,028,225 - HP15_1914 0.16 -0.4
2,028,322 + HP15_1914 0.21 -0.6
2,028,587 + HP15_1914 0.35 +0.9
2,028,803 + HP15_1914 0.47 -0.1
2,028,968 - HP15_1914 0.55 +0.2
2,028,987 + HP15_1914 0.56 +0.4
2,029,109 + HP15_1914 0.63 +0.4
2,029,121 + HP15_1914 0.63 -0.5
2,029,121 + HP15_1914 0.63 +0.4
2,029,129 - HP15_1914 0.64 +0.7
2,029,233 - HP15_1914 0.69 -0.4
2,029,444 + HP15_1914 0.80 +0.1
2,029,661 - -0.0
2,029,688 - +0.3
2,029,728 + -0.1
2,029,747 + -0.1
2,029,964 - HP15_1915 0.13 +0.5
2,030,029 - HP15_1915 0.18 +1.3
2,030,228 - HP15_1915 0.36 +0.4
2,030,271 + HP15_1915 0.39 -1.4
2,030,285 + HP15_1915 0.41 -0.3
2,030,300 - HP15_1915 0.42 +0.1
2,030,530 - HP15_1915 0.62 +0.1
2,030,531 + HP15_1915 0.62 +0.3
2,030,562 + HP15_1915 0.65 -0.2
2,030,587 + HP15_1915 0.67 -0.9
2,030,612 + HP15_1915 0.69 -0.4
2,030,698 - -0.1
2,030,714 + HP15_1915 0.78 +0.3
2,030,812 - HP15_1915 0.86 -0.7

Or see this region's nucleotide sequence