Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1858 and HP15_1859 are separated by 1 nucleotides HP15_1859 and HP15_1860 are separated by 29 nucleotides HP15_1860 and HP15_1861 are separated by 143 nucleotides
HP15_1858: HP15_1858 - peptidoglycan-binding domain 1 protein, at 1,960,145 to 1,961,851
_1858
HP15_1859: HP15_1859 - patatin-like phospholipase domain-containing protein, at 1,961,853 to 1,963,340
_1859
HP15_1860: HP15_1860 - VacJ family lipoprotein, at 1,963,370 to 1,964,161
_1860
HP15_1861: HP15_1861 - thioesterase superfamily protein, at 1,964,305 to 1,964,655
_1861
Position (kb) 1961
1962
1963
1964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1960.903 kb on + strand, within HP15_1858 at 1960.996 kb on + strand, within HP15_1858 at 1961.088 kb on + strand, within HP15_1858 at 1961.110 kb on + strand, within HP15_1858 at 1961.245 kb on + strand, within HP15_1858 at 1961.353 kb on + strand, within HP15_1858 at 1961.450 kb on + strand, within HP15_1858 at 1961.729 kb on + strand at 1961.737 kb on - strand at 1961.889 kb on + strand at 1961.893 kb on - strand at 1961.893 kb on - strand at 1961.936 kb on + strand at 1961.944 kb on - strand at 1962.026 kb on + strand, within HP15_1859 at 1962.326 kb on - strand, within HP15_1859 at 1962.327 kb on - strand, within HP15_1859 at 1962.329 kb on - strand, within HP15_1859 at 1962.423 kb on - strand, within HP15_1859 at 1962.480 kb on + strand, within HP15_1859 at 1962.495 kb on + strand, within HP15_1859 at 1962.549 kb on + strand, within HP15_1859 at 1962.778 kb on - strand, within HP15_1859 at 1962.811 kb on + strand, within HP15_1859 at 1963.003 kb on + strand, within HP15_1859 at 1963.003 kb on + strand, within HP15_1859 at 1963.003 kb on + strand, within HP15_1859 at 1963.003 kb on + strand, within HP15_1859 at 1963.003 kb on + strand, within HP15_1859 at 1963.003 kb on + strand, within HP15_1859 at 1963.003 kb on + strand, within HP15_1859 at 1963.003 kb on + strand, within HP15_1859 at 1963.011 kb on - strand, within HP15_1859 at 1963.011 kb on - strand, within HP15_1859 at 1963.016 kb on - strand, within HP15_1859 at 1963.059 kb on + strand, within HP15_1859 at 1963.059 kb on + strand, within HP15_1859 at 1963.067 kb on - strand, within HP15_1859 at 1963.105 kb on - strand, within HP15_1859 at 1963.106 kb on - strand, within HP15_1859 at 1963.113 kb on - strand, within HP15_1859 at 1963.115 kb on - strand, within HP15_1859 at 1963.267 kb on + strand at 1963.348 kb on - strand at 1963.637 kb on + strand, within HP15_1860 at 1963.637 kb on + strand, within HP15_1860 at 1963.749 kb on - strand, within HP15_1860 at 1963.777 kb on + strand, within HP15_1860 at 1963.777 kb on + strand, within HP15_1860 at 1963.784 kb on + strand, within HP15_1860 at 1963.867 kb on + strand, within HP15_1860 at 1964.035 kb on - strand, within HP15_1860 at 1964.249 kb on + strand at 1964.274 kb on + strand at 1964.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,960,903 + HP15_1858 0.44 -2.0 1,960,996 + HP15_1858 0.50 -1.0 1,961,088 + HP15_1858 0.55 +1.9 1,961,110 + HP15_1858 0.57 -0.8 1,961,245 + HP15_1858 0.64 -1.2 1,961,353 + HP15_1858 0.71 -0.2 1,961,450 + HP15_1858 0.76 +0.5 1,961,729 + +0.9 1,961,737 - +0.3 1,961,889 + -0.6 1,961,893 - -0.4 1,961,893 - -0.9 1,961,936 + +0.0 1,961,944 - -0.6 1,962,026 + HP15_1859 0.12 -1.2 1,962,326 - HP15_1859 0.32 +1.3 1,962,327 - HP15_1859 0.32 -0.3 1,962,329 - HP15_1859 0.32 -0.6 1,962,423 - HP15_1859 0.38 -0.8 1,962,480 + HP15_1859 0.42 -0.1 1,962,495 + HP15_1859 0.43 -0.9 1,962,549 + HP15_1859 0.47 +1.4 1,962,778 - HP15_1859 0.62 -0.1 1,962,811 + HP15_1859 0.64 -1.1 1,963,003 + HP15_1859 0.77 +0.9 1,963,003 + HP15_1859 0.77 -1.1 1,963,003 + HP15_1859 0.77 -0.5 1,963,003 + HP15_1859 0.77 -0.7 1,963,003 + HP15_1859 0.77 +0.6 1,963,003 + HP15_1859 0.77 -1.6 1,963,003 + HP15_1859 0.77 +0.3 1,963,003 + HP15_1859 0.77 -0.8 1,963,011 - HP15_1859 0.78 -3.5 1,963,011 - HP15_1859 0.78 +2.7 1,963,016 - HP15_1859 0.78 -0.3 1,963,059 + HP15_1859 0.81 -0.4 1,963,059 + HP15_1859 0.81 -0.2 1,963,067 - HP15_1859 0.82 -0.2 1,963,105 - HP15_1859 0.84 -0.6 1,963,106 - HP15_1859 0.84 -1.4 1,963,113 - HP15_1859 0.85 -0.4 1,963,115 - HP15_1859 0.85 -0.3 1,963,267 + -2.2 1,963,348 - +0.1 1,963,637 + HP15_1860 0.34 -0.1 1,963,637 + HP15_1860 0.34 -0.4 1,963,749 - HP15_1860 0.48 -0.3 1,963,777 + HP15_1860 0.51 -0.3 1,963,777 + HP15_1860 0.51 -2.7 1,963,784 + HP15_1860 0.52 -1.0 1,963,867 + HP15_1860 0.63 -0.7 1,964,035 - HP15_1860 0.84 -1.6 1,964,249 + -0.5 1,964,274 + -1.1 1,964,284 - -1.6
Or see this region's nucleotide sequence