Experiment: m.b. Fusidic 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16370 and PGA1_c16380 overlap by 4 nucleotides PGA1_c16380 and PGA1_c16390 overlap by 4 nucleotides
PGA1_c16370: PGA1_c16370 - arginase ArcA, at 1,697,965 to 1,698,897
_c16370
PGA1_c16380: PGA1_c16380 - citrulline utilization hydrolase (from data) , at 1,698,894 to 1,699,823
_c16380
PGA1_c16390: PGA1_c16390 - ornithine cyclodeaminase ArcB, at 1,699,820 to 1,700,866
_c16390
Position (kb)
1698
1699
1700 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1697.950 kb on - strand at 1697.959 kb on + strand at 1697.967 kb on - strand at 1697.977 kb on + strand at 1698.029 kb on + strand at 1698.103 kb on - strand, within PGA1_c16370 at 1698.157 kb on + strand, within PGA1_c16370 at 1698.165 kb on - strand, within PGA1_c16370 at 1698.373 kb on + strand, within PGA1_c16370 at 1698.406 kb on - strand, within PGA1_c16370 at 1698.526 kb on + strand, within PGA1_c16370 at 1698.532 kb on - strand, within PGA1_c16370 at 1698.556 kb on - strand, within PGA1_c16370 at 1698.556 kb on - strand, within PGA1_c16370 at 1698.683 kb on - strand, within PGA1_c16370 at 1698.725 kb on + strand, within PGA1_c16370 at 1698.735 kb on - strand, within PGA1_c16370 at 1698.845 kb on + strand at 1698.850 kb on + strand at 1698.981 kb on + strand at 1698.989 kb on - strand, within PGA1_c16380 at 1699.016 kb on - strand, within PGA1_c16380 at 1699.023 kb on - strand, within PGA1_c16380 at 1699.072 kb on - strand, within PGA1_c16380 at 1699.074 kb on - strand, within PGA1_c16380 at 1699.118 kb on - strand, within PGA1_c16380 at 1699.234 kb on + strand, within PGA1_c16380 at 1699.238 kb on + strand, within PGA1_c16380 at 1699.283 kb on + strand, within PGA1_c16380 at 1699.309 kb on + strand, within PGA1_c16380 at 1699.388 kb on + strand, within PGA1_c16380 at 1699.388 kb on + strand, within PGA1_c16380 at 1699.437 kb on - strand, within PGA1_c16380 at 1699.450 kb on - strand, within PGA1_c16380 at 1699.460 kb on + strand, within PGA1_c16380 at 1699.502 kb on - strand, within PGA1_c16380 at 1699.525 kb on - strand, within PGA1_c16380 at 1699.666 kb on - strand, within PGA1_c16380 at 1699.829 kb on + strand at 1700.076 kb on + strand, within PGA1_c16390 at 1700.084 kb on + strand, within PGA1_c16390 at 1700.084 kb on - strand, within PGA1_c16390 at 1700.110 kb on - strand, within PGA1_c16390 at 1700.436 kb on - strand, within PGA1_c16390 at 1700.486 kb on + strand, within PGA1_c16390 at 1700.498 kb on + strand, within PGA1_c16390 at 1700.747 kb on + strand, within PGA1_c16390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml remove 1,697,950 - -1.4 1,697,959 + +0.9 1,697,967 - +1.1 1,697,977 + +0.9 1,698,029 + +0.5 1,698,103 - PGA1_c16370 0.15 -1.3 1,698,157 + PGA1_c16370 0.21 -1.7 1,698,165 - PGA1_c16370 0.21 +1.2 1,698,373 + PGA1_c16370 0.44 +2.3 1,698,406 - PGA1_c16370 0.47 -0.9 1,698,526 + PGA1_c16370 0.60 -1.4 1,698,532 - PGA1_c16370 0.61 -0.0 1,698,556 - PGA1_c16370 0.63 -0.7 1,698,556 - PGA1_c16370 0.63 -0.1 1,698,683 - PGA1_c16370 0.77 -0.0 1,698,725 + PGA1_c16370 0.81 -0.7 1,698,735 - PGA1_c16370 0.83 +1.8 1,698,845 + -0.0 1,698,850 + -1.0 1,698,981 + +0.9 1,698,989 - PGA1_c16380 0.10 -1.4 1,699,016 - PGA1_c16380 0.13 -1.0 1,699,023 - PGA1_c16380 0.14 -1.9 1,699,072 - PGA1_c16380 0.19 +0.0 1,699,074 - PGA1_c16380 0.19 -1.0 1,699,118 - PGA1_c16380 0.24 -1.2 1,699,234 + PGA1_c16380 0.37 +0.1 1,699,238 + PGA1_c16380 0.37 +0.5 1,699,283 + PGA1_c16380 0.42 +2.0 1,699,309 + PGA1_c16380 0.45 -1.4 1,699,388 + PGA1_c16380 0.53 -1.7 1,699,388 + PGA1_c16380 0.53 +1.0 1,699,437 - PGA1_c16380 0.58 -2.4 1,699,450 - PGA1_c16380 0.60 +1.2 1,699,460 + PGA1_c16380 0.61 +1.0 1,699,502 - PGA1_c16380 0.65 +1.0 1,699,525 - PGA1_c16380 0.68 -1.7 1,699,666 - PGA1_c16380 0.83 -1.0 1,699,829 + +1.5 1,700,076 + PGA1_c16390 0.24 -0.7 1,700,084 + PGA1_c16390 0.25 +0.2 1,700,084 - PGA1_c16390 0.25 -0.1 1,700,110 - PGA1_c16390 0.28 -0.2 1,700,436 - PGA1_c16390 0.59 -1.0 1,700,486 + PGA1_c16390 0.64 -1.0 1,700,498 + PGA1_c16390 0.65 +0.2 1,700,747 + PGA1_c16390 0.89 -0.9
Or see this region's nucleotide sequence