Strain Fitness in Marinobacter adhaerens HP15 around HP15_1372

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1371 and HP15_1372 are separated by 183 nucleotidesHP15_1372 and HP15_1373 are separated by 0 nucleotides HP15_1371: HP15_1371 - aspartate aminotransferase, at 1,443,725 to 1,444,909 _1371 HP15_1372: HP15_1372 - excinuclease ABC subunit B, at 1,445,093 to 1,447,153 _1372 HP15_1373: HP15_1373 - acetyltransferase, GNAT family, at 1,447,154 to 1,448,272 _1373 Position (kb) 1445 1446 1447 1448Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1444.927 kb on - strandat 1444.927 kb on - strandat 1445.016 kb on - strandat 1445.152 kb on + strandat 1445.173 kb on + strandat 1445.173 kb on + strandat 1445.181 kb on - strandat 1445.338 kb on + strand, within HP15_1372at 1445.346 kb on - strand, within HP15_1372at 1445.346 kb on - strand, within HP15_1372at 1445.483 kb on - strand, within HP15_1372at 1445.570 kb on + strand, within HP15_1372at 1445.583 kb on + strand, within HP15_1372at 1445.629 kb on + strand, within HP15_1372at 1445.637 kb on - strand, within HP15_1372at 1445.711 kb on - strand, within HP15_1372at 1445.822 kb on + strand, within HP15_1372at 1445.825 kb on - strand, within HP15_1372at 1445.835 kb on + strand, within HP15_1372at 1445.984 kb on - strand, within HP15_1372at 1446.168 kb on - strand, within HP15_1372at 1446.172 kb on + strand, within HP15_1372at 1446.459 kb on - strand, within HP15_1372at 1446.489 kb on - strand, within HP15_1372at 1446.489 kb on - strand, within HP15_1372at 1446.500 kb on + strand, within HP15_1372at 1446.582 kb on - strand, within HP15_1372at 1446.644 kb on + strand, within HP15_1372at 1446.644 kb on + strand, within HP15_1372at 1446.768 kb on - strand, within HP15_1372at 1446.795 kb on - strand, within HP15_1372at 1446.803 kb on - strand, within HP15_1372at 1446.863 kb on - strand, within HP15_1372at 1446.865 kb on + strand, within HP15_1372at 1446.875 kb on - strand, within HP15_1372at 1446.882 kb on + strand, within HP15_1372at 1447.383 kb on - strand, within HP15_1373at 1447.388 kb on - strand, within HP15_1373at 1447.854 kb on - strand, within HP15_1373at 1447.878 kb on - strand, within HP15_1373at 1447.889 kb on - strand, within HP15_1373at 1447.898 kb on + strand, within HP15_1373at 1448.005 kb on + strand, within HP15_1373at 1448.060 kb on - strand, within HP15_1373at 1448.092 kb on - strand, within HP15_1373at 1448.092 kb on - strand, within HP15_1373

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,444,927 - -0.0
1,444,927 - -0.3
1,445,016 - -4.5
1,445,152 + -3.2
1,445,173 + -6.7
1,445,173 + -3.7
1,445,181 - -4.8
1,445,338 + HP15_1372 0.12 -5.8
1,445,346 - HP15_1372 0.12 -1.8
1,445,346 - HP15_1372 0.12 -0.6
1,445,483 - HP15_1372 0.19 -4.4
1,445,570 + HP15_1372 0.23 +1.0
1,445,583 + HP15_1372 0.24 -4.3
1,445,629 + HP15_1372 0.26 -2.8
1,445,637 - HP15_1372 0.26 -2.3
1,445,711 - HP15_1372 0.30 -4.6
1,445,822 + HP15_1372 0.35 -5.3
1,445,825 - HP15_1372 0.36 -5.2
1,445,835 + HP15_1372 0.36 -3.0
1,445,984 - HP15_1372 0.43 -3.0
1,446,168 - HP15_1372 0.52 -1.3
1,446,172 + HP15_1372 0.52 -1.8
1,446,459 - HP15_1372 0.66 -5.3
1,446,489 - HP15_1372 0.68 -3.5
1,446,489 - HP15_1372 0.68 -2.0
1,446,500 + HP15_1372 0.68 -3.9
1,446,582 - HP15_1372 0.72 -4.7
1,446,644 + HP15_1372 0.75 -4.6
1,446,644 + HP15_1372 0.75 -5.9
1,446,768 - HP15_1372 0.81 -2.2
1,446,795 - HP15_1372 0.83 -6.7
1,446,803 - HP15_1372 0.83 -4.8
1,446,863 - HP15_1372 0.86 -2.5
1,446,865 + HP15_1372 0.86 -3.8
1,446,875 - HP15_1372 0.86 -2.0
1,446,882 + HP15_1372 0.87 -6.1
1,447,383 - HP15_1373 0.20 -0.3
1,447,388 - HP15_1373 0.21 -0.3
1,447,854 - HP15_1373 0.63 -1.2
1,447,878 - HP15_1373 0.65 -0.0
1,447,889 - HP15_1373 0.66 +0.2
1,447,898 + HP15_1373 0.66 -1.0
1,448,005 + HP15_1373 0.76 -0.1
1,448,060 - HP15_1373 0.81 +0.5
1,448,092 - HP15_1373 0.84 +0.5
1,448,092 - HP15_1373 0.84 -0.4

Or see this region's nucleotide sequence