Experiment: m.b. Cisplatin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1224 and HP15_1225 overlap by 1 nucleotides HP15_1225 and HP15_1226 are separated by 57 nucleotides HP15_1226 and HP15_1227 overlap by 11 nucleotides HP15_1227 and HP15_1228 are separated by 11 nucleotides
HP15_1224: HP15_1224 - glutaredoxin 2, at 1,273,500 to 1,273,733
_1224
HP15_1225: HP15_1225 - oxidoreductase, short chain dehydrogenase/reductase family, at 1,273,733 to 1,274,482
_1225
HP15_1226: HP15_1226 - 2-phosphoglycolate phosphatase, prokaryotic, at 1,274,540 to 1,275,211
_1226
HP15_1227: HP15_1227 - 3-demethylubiquinone-9 3-methyltransferase, at 1,275,201 to 1,275,941
_1227
HP15_1228: HP15_1228 - chlorohydrolase/deaminase family protein, at 1,275,953 to 1,277,290
_1228
Position (kb)
1274
1275
1276 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1273.542 kb on + strand, within HP15_1224 at 1273.550 kb on - strand, within HP15_1224 at 1273.678 kb on + strand, within HP15_1224 at 1273.698 kb on - strand, within HP15_1224 at 1274.002 kb on - strand, within HP15_1225 at 1274.092 kb on - strand, within HP15_1225 at 1274.189 kb on - strand, within HP15_1225 at 1274.270 kb on - strand, within HP15_1225 at 1274.390 kb on - strand, within HP15_1225 at 1274.484 kb on + strand at 1274.486 kb on - strand at 1275.206 kb on - strand at 1275.916 kb on - strand at 1275.936 kb on - strand at 1275.984 kb on - strand at 1276.158 kb on - strand, within HP15_1228 at 1276.158 kb on - strand, within HP15_1228
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml remove 1,273,542 + HP15_1224 0.18 -1.5 1,273,550 - HP15_1224 0.21 +0.1 1,273,678 + HP15_1224 0.76 -0.8 1,273,698 - HP15_1224 0.85 +0.3 1,274,002 - HP15_1225 0.36 -0.0 1,274,092 - HP15_1225 0.48 -3.1 1,274,189 - HP15_1225 0.61 -1.0 1,274,270 - HP15_1225 0.72 -0.9 1,274,390 - HP15_1225 0.88 +0.1 1,274,484 + +0.4 1,274,486 - -1.3 1,275,206 - +0.1 1,275,916 - +0.1 1,275,936 - +1.1 1,275,984 - +1.0 1,276,158 - HP15_1228 0.15 +0.4 1,276,158 - HP15_1228 0.15 +0.3
Or see this region's nucleotide sequence