Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12270

Experiment: m.b. Fusidic 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c12250 and PGA1_c12260 overlap by 4 nucleotidesPGA1_c12260 and PGA1_c12270 are separated by 2 nucleotidesPGA1_c12270 and PGA1_c12280 are separated by 264 nucleotidesPGA1_c12280 and PGA1_c12290 overlap by 1 nucleotides PGA1_c12250: PGA1_c12250 - monovalent cation/proton antiporter subunit D, at 1,270,002 to 1,271,564 _c12250 PGA1_c12260: PGA1_c12260 - monovalent cation/proton antiporter subunit C, at 1,271,561 to 1,271,914 _c12260 PGA1_c12270: PGA1_c12270 - monovalent cation/proton antiporter subunit A/B, at 1,271,917 to 1,274,778 _c12270 PGA1_c12280: PGA1_c12280 - Rhodanese-related sulfurtransferase, at 1,275,043 to 1,275,606 _c12280 PGA1_c12290: PGA1_c12290 - Poly(3-hydroxybutyrate) depolymerase, at 1,275,606 to 1,276,466 _c12290 Position (kb) 1271 1272 1273 1274 1275Strain fitness (log2 ratio) -1 0 1at 1271.941 kb on - strandat 1274.866 kb on - strandat 1274.910 kb on + strandat 1274.915 kb on + strandat 1274.925 kb on + strandat 1274.963 kb on + strandat 1274.971 kb on - strandat 1275.023 kb on + strandat 1275.026 kb on + strandat 1275.083 kb on - strandat 1275.252 kb on - strand, within PGA1_c12280at 1275.282 kb on + strand, within PGA1_c12280at 1275.282 kb on + strand, within PGA1_c12280at 1275.290 kb on - strand, within PGA1_c12280at 1275.295 kb on - strand, within PGA1_c12280at 1275.315 kb on - strand, within PGA1_c12280at 1275.406 kb on - strand, within PGA1_c12280at 1275.444 kb on + strand, within PGA1_c12280at 1275.463 kb on + strand, within PGA1_c12280at 1275.540 kb on - strand, within PGA1_c12280at 1275.550 kb on + strandat 1275.603 kb on - strandat 1275.692 kb on + strand, within PGA1_c12290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0002 mg/ml
remove
1,271,941 - +0.3
1,274,866 - -1.3
1,274,910 + -1.7
1,274,915 + -0.5
1,274,925 + +0.1
1,274,963 + -1.7
1,274,971 - +0.3
1,275,023 + -0.3
1,275,026 + +1.3
1,275,083 - +1.0
1,275,252 - PGA1_c12280 0.37 +0.1
1,275,282 + PGA1_c12280 0.42 +0.4
1,275,282 + PGA1_c12280 0.42 -0.7
1,275,290 - PGA1_c12280 0.44 +0.3
1,275,295 - PGA1_c12280 0.45 -1.2
1,275,315 - PGA1_c12280 0.48 +1.1
1,275,406 - PGA1_c12280 0.64 -0.1
1,275,444 + PGA1_c12280 0.71 -0.1
1,275,463 + PGA1_c12280 0.74 +0.6
1,275,540 - PGA1_c12280 0.88 -0.3
1,275,550 + +0.0
1,275,603 - -1.7
1,275,692 + PGA1_c12290 0.10 +1.4

Or see this region's nucleotide sequence