Strain Fitness in Marinobacter adhaerens HP15 around HP15_994

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_993 and HP15_994 are separated by 20 nucleotidesHP15_994 and HP15_995 overlap by 1 nucleotidesHP15_995 and HP15_996 are separated by 86 nucleotides HP15_993: HP15_993 - binding-protein-dependent transport systems inner membrane component, at 1,001,098 to 1,002,252 _993 HP15_994: HP15_994 - glycine betaine/carnitine/choline ABC transporter ATP-binding protein, at 1,002,273 to 1,003,220 _994 HP15_995: HP15_995 - binding-protein-dependent transport systems inner membrane component, at 1,003,220 to 1,003,963 _995 HP15_996: HP15_996 - sugar efflux permease, MFS-like protein, at 1,004,050 to 1,005,321 _996 Position (kb) 1002 1003 1004Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1001.347 kb on + strand, within HP15_993at 1001.450 kb on + strand, within HP15_993at 1001.619 kb on + strand, within HP15_993at 1001.661 kb on - strand, within HP15_993at 1001.751 kb on + strand, within HP15_993at 1001.755 kb on + strand, within HP15_993at 1001.755 kb on + strand, within HP15_993at 1001.755 kb on + strand, within HP15_993at 1001.763 kb on - strand, within HP15_993at 1001.851 kb on + strand, within HP15_993at 1001.857 kb on + strand, within HP15_993at 1001.857 kb on + strand, within HP15_993at 1001.865 kb on - strand, within HP15_993at 1001.898 kb on - strand, within HP15_993at 1001.904 kb on + strand, within HP15_993at 1001.934 kb on + strand, within HP15_993at 1002.052 kb on + strand, within HP15_993at 1002.059 kb on + strand, within HP15_993at 1002.125 kb on + strand, within HP15_993at 1002.164 kb on - strandat 1002.168 kb on + strandat 1002.197 kb on - strandat 1002.224 kb on + strandat 1002.232 kb on - strandat 1002.263 kb on - strandat 1002.269 kb on - strandat 1002.328 kb on + strandat 1002.336 kb on - strandat 1002.392 kb on + strand, within HP15_994at 1002.438 kb on + strand, within HP15_994at 1002.457 kb on + strand, within HP15_994at 1002.478 kb on + strand, within HP15_994at 1002.518 kb on + strand, within HP15_994at 1002.541 kb on + strand, within HP15_994at 1002.575 kb on - strand, within HP15_994at 1002.645 kb on - strand, within HP15_994at 1002.700 kb on + strand, within HP15_994at 1002.700 kb on + strand, within HP15_994at 1002.708 kb on - strand, within HP15_994at 1002.739 kb on - strand, within HP15_994at 1002.856 kb on + strand, within HP15_994at 1003.023 kb on - strand, within HP15_994at 1003.042 kb on - strand, within HP15_994at 1003.129 kb on + strandat 1003.162 kb on - strandat 1003.162 kb on - strandat 1003.233 kb on - strandat 1003.253 kb on + strandat 1003.310 kb on + strand, within HP15_995at 1003.388 kb on - strand, within HP15_995at 1003.410 kb on - strand, within HP15_995at 1003.410 kb on - strand, within HP15_995at 1003.504 kb on - strand, within HP15_995at 1003.541 kb on + strand, within HP15_995at 1003.573 kb on + strand, within HP15_995at 1003.614 kb on - strand, within HP15_995at 1003.621 kb on - strandat 1003.663 kb on + strand, within HP15_995at 1003.663 kb on + strand, within HP15_995at 1003.663 kb on + strand, within HP15_995at 1003.722 kb on + strand, within HP15_995at 1003.722 kb on + strand, within HP15_995at 1003.727 kb on + strand, within HP15_995at 1003.730 kb on - strand, within HP15_995at 1003.747 kb on - strand, within HP15_995at 1003.797 kb on + strand, within HP15_995at 1003.847 kb on + strand, within HP15_995at 1004.095 kb on - strandat 1004.095 kb on - strandat 1004.161 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,001,347 + HP15_993 0.22 -0.4
1,001,450 + HP15_993 0.30 -1.2
1,001,619 + HP15_993 0.45 -1.4
1,001,661 - HP15_993 0.49 -0.8
1,001,751 + HP15_993 0.57 -0.7
1,001,755 + HP15_993 0.57 -1.0
1,001,755 + HP15_993 0.57 -0.6
1,001,755 + HP15_993 0.57 -0.1
1,001,763 - HP15_993 0.58 +1.6
1,001,851 + HP15_993 0.65 -1.2
1,001,857 + HP15_993 0.66 -1.1
1,001,857 + HP15_993 0.66 -0.4
1,001,865 - HP15_993 0.66 -0.5
1,001,898 - HP15_993 0.69 -0.3
1,001,904 + HP15_993 0.70 +0.2
1,001,934 + HP15_993 0.72 -0.5
1,002,052 + HP15_993 0.83 +2.1
1,002,059 + HP15_993 0.83 +0.3
1,002,125 + HP15_993 0.89 -0.8
1,002,164 - -0.1
1,002,168 + -0.3
1,002,197 - +0.2
1,002,224 + -0.4
1,002,232 - +1.1
1,002,263 - -0.8
1,002,269 - -0.2
1,002,328 + +0.7
1,002,336 - +0.7
1,002,392 + HP15_994 0.13 -1.2
1,002,438 + HP15_994 0.17 +0.0
1,002,457 + HP15_994 0.19 -0.1
1,002,478 + HP15_994 0.22 -1.5
1,002,518 + HP15_994 0.26 -0.1
1,002,541 + HP15_994 0.28 +0.2
1,002,575 - HP15_994 0.32 -0.4
1,002,645 - HP15_994 0.39 +2.2
1,002,700 + HP15_994 0.45 +0.1
1,002,700 + HP15_994 0.45 -0.2
1,002,708 - HP15_994 0.46 -0.7
1,002,739 - HP15_994 0.49 -0.2
1,002,856 + HP15_994 0.61 -0.3
1,003,023 - HP15_994 0.79 +0.6
1,003,042 - HP15_994 0.81 -0.6
1,003,129 + -0.6
1,003,162 - -0.6
1,003,162 - -2.8
1,003,233 - -0.0
1,003,253 + +0.5
1,003,310 + HP15_995 0.12 +0.3
1,003,388 - HP15_995 0.23 -0.6
1,003,410 - HP15_995 0.26 -1.1
1,003,410 - HP15_995 0.26 +0.6
1,003,504 - HP15_995 0.38 +0.2
1,003,541 + HP15_995 0.43 -0.2
1,003,573 + HP15_995 0.47 -0.3
1,003,614 - HP15_995 0.53 -0.1
1,003,621 - -1.8
1,003,663 + HP15_995 0.60 -0.4
1,003,663 + HP15_995 0.60 -2.5
1,003,663 + HP15_995 0.60 +1.5
1,003,722 + HP15_995 0.67 -1.4
1,003,722 + HP15_995 0.67 -0.6
1,003,727 + HP15_995 0.68 -0.4
1,003,730 - HP15_995 0.69 -1.0
1,003,747 - HP15_995 0.71 -0.1
1,003,797 + HP15_995 0.78 +1.6
1,003,847 + HP15_995 0.84 +2.4
1,004,095 - -0.6
1,004,095 - -0.8
1,004,161 + -0.2

Or see this region's nucleotide sequence