Strain Fitness in Marinobacter adhaerens HP15 around HP15_993

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_992 and HP15_991 are separated by 18 nucleotidesHP15_991 and HP15_993 are separated by 36 nucleotidesHP15_993 and HP15_994 are separated by 20 nucleotidesHP15_994 and HP15_995 overlap by 1 nucleotides HP15_992: HP15_992 - hypothetical protein, at 999,985 to 1,000,125 _992 HP15_991: HP15_991 - substrate-binding region of ABC-type glycine betaine transport system, at 1,000,144 to 1,001,061 _991 HP15_993: HP15_993 - binding-protein-dependent transport systems inner membrane component, at 1,001,098 to 1,002,252 _993 HP15_994: HP15_994 - glycine betaine/carnitine/choline ABC transporter ATP-binding protein, at 1,002,273 to 1,003,220 _994 HP15_995: HP15_995 - binding-protein-dependent transport systems inner membrane component, at 1,003,220 to 1,003,963 _995 Position (kb) 1001 1002 1003Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1000.136 kb on + strandat 1000.286 kb on + strand, within HP15_991at 1000.487 kb on - strand, within HP15_991at 1000.536 kb on + strand, within HP15_991at 1000.621 kb on + strand, within HP15_991at 1000.621 kb on + strand, within HP15_991at 1000.629 kb on - strand, within HP15_991at 1000.648 kb on - strand, within HP15_991at 1000.688 kb on - strand, within HP15_991at 1000.726 kb on - strand, within HP15_991at 1000.872 kb on + strand, within HP15_991at 1000.880 kb on - strand, within HP15_991at 1001.050 kb on + strandat 1001.086 kb on - strandat 1001.086 kb on - strandat 1001.127 kb on - strandat 1001.129 kb on + strandat 1001.129 kb on + strandat 1001.129 kb on + strandat 1001.129 kb on + strandat 1001.137 kb on - strandat 1001.145 kb on + strandat 1001.153 kb on - strandat 1001.153 kb on - strandat 1001.229 kb on + strand, within HP15_993at 1001.239 kb on + strand, within HP15_993at 1001.347 kb on + strand, within HP15_993at 1001.450 kb on + strand, within HP15_993at 1001.619 kb on + strand, within HP15_993at 1001.661 kb on - strand, within HP15_993at 1001.751 kb on + strand, within HP15_993at 1001.755 kb on + strand, within HP15_993at 1001.755 kb on + strand, within HP15_993at 1001.755 kb on + strand, within HP15_993at 1001.763 kb on - strand, within HP15_993at 1001.851 kb on + strand, within HP15_993at 1001.857 kb on + strand, within HP15_993at 1001.857 kb on + strand, within HP15_993at 1001.865 kb on - strand, within HP15_993at 1001.898 kb on - strand, within HP15_993at 1001.904 kb on + strand, within HP15_993at 1001.934 kb on + strand, within HP15_993at 1002.052 kb on + strand, within HP15_993at 1002.059 kb on + strand, within HP15_993at 1002.125 kb on + strand, within HP15_993at 1002.164 kb on - strandat 1002.168 kb on + strandat 1002.197 kb on - strandat 1002.224 kb on + strandat 1002.232 kb on - strandat 1002.263 kb on - strandat 1002.269 kb on - strandat 1002.328 kb on + strandat 1002.336 kb on - strandat 1002.392 kb on + strand, within HP15_994at 1002.438 kb on + strand, within HP15_994at 1002.457 kb on + strand, within HP15_994at 1002.478 kb on + strand, within HP15_994at 1002.518 kb on + strand, within HP15_994at 1002.541 kb on + strand, within HP15_994at 1002.575 kb on - strand, within HP15_994at 1002.645 kb on - strand, within HP15_994at 1002.700 kb on + strand, within HP15_994at 1002.700 kb on + strand, within HP15_994at 1002.708 kb on - strand, within HP15_994at 1002.739 kb on - strand, within HP15_994at 1002.856 kb on + strand, within HP15_994at 1003.023 kb on - strand, within HP15_994at 1003.042 kb on - strand, within HP15_994at 1003.129 kb on + strandat 1003.162 kb on - strandat 1003.162 kb on - strandat 1003.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,000,136 + +2.2
1,000,286 + HP15_991 0.15 +0.3
1,000,487 - HP15_991 0.37 +0.2
1,000,536 + HP15_991 0.43 -1.3
1,000,621 + HP15_991 0.52 +0.2
1,000,621 + HP15_991 0.52 +0.4
1,000,629 - HP15_991 0.53 -0.9
1,000,648 - HP15_991 0.55 -0.3
1,000,688 - HP15_991 0.59 -0.4
1,000,726 - HP15_991 0.63 -2.5
1,000,872 + HP15_991 0.79 +1.4
1,000,880 - HP15_991 0.80 +1.2
1,001,050 + -0.1
1,001,086 - -0.9
1,001,086 - -0.4
1,001,127 - +0.3
1,001,129 + -0.2
1,001,129 + +0.1
1,001,129 + -0.1
1,001,129 + -0.7
1,001,137 - -0.2
1,001,145 + +1.2
1,001,153 - +0.0
1,001,153 - -0.5
1,001,229 + HP15_993 0.11 +1.6
1,001,239 + HP15_993 0.12 -1.1
1,001,347 + HP15_993 0.22 -0.4
1,001,450 + HP15_993 0.30 -1.2
1,001,619 + HP15_993 0.45 -1.4
1,001,661 - HP15_993 0.49 -0.8
1,001,751 + HP15_993 0.57 -0.7
1,001,755 + HP15_993 0.57 -1.0
1,001,755 + HP15_993 0.57 -0.6
1,001,755 + HP15_993 0.57 -0.1
1,001,763 - HP15_993 0.58 +1.6
1,001,851 + HP15_993 0.65 -1.2
1,001,857 + HP15_993 0.66 -1.1
1,001,857 + HP15_993 0.66 -0.4
1,001,865 - HP15_993 0.66 -0.5
1,001,898 - HP15_993 0.69 -0.3
1,001,904 + HP15_993 0.70 +0.2
1,001,934 + HP15_993 0.72 -0.5
1,002,052 + HP15_993 0.83 +2.1
1,002,059 + HP15_993 0.83 +0.3
1,002,125 + HP15_993 0.89 -0.8
1,002,164 - -0.1
1,002,168 + -0.3
1,002,197 - +0.2
1,002,224 + -0.4
1,002,232 - +1.1
1,002,263 - -0.8
1,002,269 - -0.2
1,002,328 + +0.7
1,002,336 - +0.7
1,002,392 + HP15_994 0.13 -1.2
1,002,438 + HP15_994 0.17 +0.0
1,002,457 + HP15_994 0.19 -0.1
1,002,478 + HP15_994 0.22 -1.5
1,002,518 + HP15_994 0.26 -0.1
1,002,541 + HP15_994 0.28 +0.2
1,002,575 - HP15_994 0.32 -0.4
1,002,645 - HP15_994 0.39 +2.2
1,002,700 + HP15_994 0.45 +0.1
1,002,700 + HP15_994 0.45 -0.2
1,002,708 - HP15_994 0.46 -0.7
1,002,739 - HP15_994 0.49 -0.2
1,002,856 + HP15_994 0.61 -0.3
1,003,023 - HP15_994 0.79 +0.6
1,003,042 - HP15_994 0.81 -0.6
1,003,129 + -0.6
1,003,162 - -0.6
1,003,162 - -2.8
1,003,233 - -0.0

Or see this region's nucleotide sequence