Strain Fitness in Shewanella amazonensis SB2B around Sama_3189

Experiment: L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate
3,782,490	+		Sama_3188	0.70	-0.8
3,782,491	-		Sama_3188	0.70	+1.2
3,782,491	-		Sama_3188	0.70	-0.6
3,782,670	+		Sama_3188	0.75	-1.8
3,782,670	+		Sama_3188	0.75	-1.4
3,782,670	+		Sama_3188	0.75	-0.1
3,782,671	-		Sama_3188	0.75	-1.0
3,782,671	-		Sama_3188	0.75	-0.3
3,782,671	-		Sama_3188	0.75	-1.6
3,782,671	-		Sama_3188	0.75	-2.2
3,782,861	+		Sama_3188	0.81	-0.5
3,782,861	+		Sama_3188	0.81	+0.5
3,782,862	-		Sama_3188	0.81	+0.5
3,782,862	-		Sama_3188	0.81	+0.0
3,782,862	-		Sama_3188	0.81	-1.8
3,782,972	+		Sama_3188	0.85	+0.7
3,782,972	+		Sama_3188	0.85	-0.0
3,783,035	+		Sama_3188	0.87	-1.0
3,783,035	+		Sama_3188	0.87	-0.2
3,783,035	+		Sama_3188	0.87	-0.2
3,783,036	-		Sama_3188	0.87	-0.2
3,783,036	-		Sama_3188	0.87	-0.1
3,783,036	-		Sama_3188	0.87	+2.1
3,783,041	+		Sama_3188	0.87	-1.1
3,783,041	+		Sama_3188	0.87	-0.6
3,783,041	+		Sama_3188	0.87	+1.0
3,783,041	+		Sama_3188	0.87	-1.9
3,783,042	-		Sama_3188	0.87	+1.1
3,783,042	-		Sama_3188	0.87	-0.0
3,783,042	-		Sama_3188	0.87	-0.7
3,783,152	+				-0.0
3,783,152	+				-0.4
3,783,152	+				-0.6
3,783,152	+				+0.6
3,783,152	+				+0.4
3,783,152	+				+0.8
3,783,152	+				+0.4
3,783,152	+				+0.8
3,783,152	+				-0.1
3,783,153	-				+2.1
3,783,153	-				+0.0
3,783,153	-				+0.2
3,783,153	-				+0.6
3,783,153	-				+0.5
3,783,153	-				-1.8
3,783,153	-				-0.4
3,783,153	-				-3.0
3,783,153	-				-1.6
3,783,153	-				-0.4
3,783,217	+				-2.0
3,783,217	+				-2.0
3,783,217	+				+0.0
3,783,217	+				+0.6
3,783,218	-				+1.1
3,783,218	-				+1.0
3,783,218	-				+0.6
3,783,218	-				+0.7
3,783,242	+				+1.1
3,783,242	+				+2.5
3,783,242	+				+0.2
3,783,242	+				-1.4
3,783,242	+				+0.9
3,783,242	+				-2.4
3,783,242	+				-1.1
3,783,242	+				+1.4
3,783,242	+				-0.5
3,783,242	+				+0.3
3,783,242	+				+0.4
3,783,242	+				+0.3
3,783,242	+				-1.8
3,783,242	+				+1.2
3,783,243	-				-2.5
3,783,243	-				+0.5
3,783,243	-				-2.0
3,783,243	-				+0.5
3,783,243	-				+0.5
3,783,243	-				+0.6
3,783,243	-				-2.5
3,783,243	-				-0.9
3,783,243	-				+1.9
3,783,243	-				+1.1
3,783,243	-				+1.1
3,783,243	-				+1.7
3,783,243	-				+0.6
3,783,243	-				+0.2
3,783,243	-				+0.3
3,783,243	-				-1.5
3,783,243	-				-2.1
3,783,243	-				-2.2
3,783,243	-				+0.2
3,783,243	-				-2.4
3,783,243	-				+0.4
3,783,418	+				-0.0
3,783,418	+				+0.1
3,783,419	-				+0.5
3,783,446	-				+0.5
3,783,446	-				+0.6
3,783,446	-				-2.2
3,783,446	-				-2.0
3,783,475	+				-0.8
3,783,475	+				+0.8
3,783,476	-				+2.5
3,783,476	-				-0.1
3,783,696	+		Sama_3189	0.18	-1.4
3,783,696	+		Sama_3189	0.18	+0.6
3,783,697	-		Sama_3189	0.18	-0.2
3,783,697	-		Sama_3189	0.18	+0.5
3,783,697	-		Sama_3189	0.18	-2.1
3,783,699	+		Sama_3189	0.18	-3.0
3,783,699	+		Sama_3189	0.18	-0.2
3,783,699	+		Sama_3189	0.18	-0.9
3,783,699	+		Sama_3189	0.18	-0.9
3,783,699	+		Sama_3189	0.18	-1.2
3,783,699	+		Sama_3189	0.18	+0.6
3,783,699	+		Sama_3189	0.18	+0.2
3,783,700	-		Sama_3189	0.18	+0.5
3,783,753	+		Sama_3189	0.23	+0.6
3,783,753	+		Sama_3189	0.23	-1.0
3,783,753	+		Sama_3189	0.23	-0.4
3,783,753	+		Sama_3189	0.23	-1.0
3,783,753	+		Sama_3189	0.23	-2.1
3,783,753	+		Sama_3189	0.23	-1.2
3,783,753	+		Sama_3189	0.23	-0.3
3,783,754	-		Sama_3189	0.23	-0.3
3,783,754	-		Sama_3189	0.23	+0.2
3,783,754	-		Sama_3189	0.23	+0.8
3,783,754	-		Sama_3189	0.23	+0.2
3,783,812	+		Sama_3189	0.28	+1.2
3,783,812	+		Sama_3189	0.28	-1.5
3,783,812	+		Sama_3189	0.28	-0.6
3,783,813	-		Sama_3189	0.28	-1.7
3,783,813	-		Sama_3189	0.28	-1.5
3,783,813	-		Sama_3189	0.28	-1.6
3,783,845	+		Sama_3189	0.31	-1.8
3,783,845	+		Sama_3189	0.31	-0.0
3,783,854	+		Sama_3189	0.31	+0.1
3,783,855	-		Sama_3189	0.31	-1.6
3,783,855	-		Sama_3189	0.31	-1.7
3,783,877	+		Sama_3189	0.33	-0.4
3,783,878	-		Sama_3189	0.33	-1.1
3,783,937	+		Sama_3189	0.38	+0.3
3,783,937	+		Sama_3189	0.38	-3.4
3,783,937	+		Sama_3189	0.38	-0.6
3,783,938	-		Sama_3189	0.38	-1.1
3,783,981	+		Sama_3189	0.42	+0.8
3,783,981	+		Sama_3189	0.42	-0.6
3,783,981	+		Sama_3189	0.42	-1.0
3,783,982	-		Sama_3189	0.42	+0.8
3,783,982	-		Sama_3189	0.42	+0.3
3,784,103	+		Sama_3189	0.52	+1.2
3,784,103	+		Sama_3189	0.52	+0.1
3,784,104	-		Sama_3189	0.52	+1.8
3,784,104	-		Sama_3189	0.52	-2.4
3,784,124	+		Sama_3189	0.54	-2.0
3,784,125	-		Sama_3189	0.54	-0.1
3,784,125	-		Sama_3189	0.54	+0.5
3,784,132	+		Sama_3189	0.54	+0.2
3,784,132	+		Sama_3189	0.54	-2.0
3,784,133	-		Sama_3189	0.54	-0.9
3,784,220	+		Sama_3189	0.62	-0.4
3,784,220	+		Sama_3189	0.62	+0.5
3,784,220	+		Sama_3189	0.62	-0.1
3,784,220	+		Sama_3189	0.62	-1.7
3,784,220	+		Sama_3189	0.62	-0.0
3,784,221	-		Sama_3189	0.62	-3.0
3,784,221	-		Sama_3189	0.62	-0.2
3,784,221	-		Sama_3189	0.62	-0.8
3,784,222	+		Sama_3189	0.62	+1.3
3,784,222	-		Sama_3189	0.62	+0.6
3,784,222	+		Sama_3189	0.62	+1.0
3,784,223	-		Sama_3189	0.62	+0.2
3,784,242	+		Sama_3189	0.63	-2.1
3,784,285	-		Sama_3189	0.67	-0.8
3,784,347	-		Sama_3189	0.72	+1.4
3,784,347	-		Sama_3189	0.72	-1.1
3,784,347	-		Sama_3189	0.72	+0.9
3,784,395	+		Sama_3189	0.76	-0.4
3,784,395	+		Sama_3189	0.76	-0.0
3,784,605	+				-2.7
3,784,605	+				-0.4
3,784,606	-				+0.2
3,784,619	+				-1.8
3,784,619	+				+1.2
3,784,620	-				-0.6
3,784,652	+				+0.5
3,784,652	+				-0.1
3,784,653	-				+0.2
3,784,653	-				-0.8
3,784,653	-				-1.6
3,784,753	+				-0.4
3,784,814	+				+1.8
3,784,815	-				-0.8
3,784,815	-				+0.6
3,784,815	-				-1.2
3,784,815	-				+0.2
3,784,815	-				+1.2
3,784,815	-				-0.2
3,784,815	-				-0.1
3,784,815	-				-2.5
3,784,828	+				-0.3
3,784,828	+				+0.8
3,784,829	-				+0.4
3,784,829	-				+0.1
3,784,829	-				-2.0
3,784,843	-				-2.4
3,784,883	-				+0.6
3,784,883	-				+0.5
3,784,883	-				-0.7
3,785,062	+				-0.8
3,785,063	-				+0.3
3,785,063	-				-0.3
3,785,102	+				-1.1
3,785,102	+				+0.6
3,785,103	-				-1.4
3,785,140	+		Sama_3190	0.11	+0.8
3,785,140	+		Sama_3190	0.11	+1.6
3,785,140	+		Sama_3190	0.11	-0.2
3,785,140	+		Sama_3190	0.11	+0.1
3,785,141	-		Sama_3190	0.11	+3.1
3,785,141	-		Sama_3190	0.11	+0.8
3,785,141	-		Sama_3190	0.11	+1.5
3,785,171	+		Sama_3190	0.18	+0.2
3,785,172	-		Sama_3190	0.18	-0.4
3,785,182	+		Sama_3190	0.21	-1.1
3,785,336	+		Sama_3190	0.57	+4.5
3,785,336	+		Sama_3190	0.57	-0.8
3,785,336	+		Sama_3190	0.57	-3.1
3,785,337	-		Sama_3190	0.57	-0.9
3,785,337	-		Sama_3190	0.57	+2.4
3,785,337	-		Sama_3190	0.57	-1.8
3,785,346	+		Sama_3190	0.59	+0.2
3,785,346	+		Sama_3190	0.59	-1.0
3,785,346	+		Sama_3190	0.59	+1.2
3,785,346	+		Sama_3190	0.59	+1.9
3,785,346	+		Sama_3190	0.59	-3.0
3,785,346	+		Sama_3190	0.59	-0.9
3,785,346	+		Sama_3190	0.59	+1.5
3,785,346	+		Sama_3190	0.59	+0.5
3,785,346	+		Sama_3190	0.59	+1.0
3,785,346	+		Sama_3190	0.59	+0.2
3,785,347	-		Sama_3190	0.59	+2.5
3,785,347	-		Sama_3190	0.59	+1.8
3,785,347	-		Sama_3190	0.59	+2.9
3,785,347	-		Sama_3190	0.59	+1.3
3,785,347	-		Sama_3190	0.59	-0.4
3,785,347	-		Sama_3190	0.59	-0.9
3,785,347	-		Sama_3190	0.59	-0.7
3,785,347	-		Sama_3190	0.59	+1.2
3,785,347	-		Sama_3190	0.59	+0.6
3,785,347	-		Sama_3190	0.59	-0.2
3,785,347	-		Sama_3190	0.59	+0.7
3,785,347	-		Sama_3190	0.59	+0.6
3,785,566	+				-0.0
3,785,566	+				-2.7
3,785,566	+				+0.6
3,785,567	-				-0.2
3,785,567	-				+1.9
3,785,567	-				-0.8
3,785,612	+				-0.1
3,785,612	+				+0.8
3,785,612	+				-0.4
3,785,612	+				-1.2
3,785,612	+				-0.4
3,785,612	+				+0.3
3,785,612	+				-1.4
3,785,612	+				+1.0
3,785,613	-				-1.4
3,785,613	-				-0.8
3,785,613	-				+0.9
3,785,613	-				-1.2
3,785,613	-				+0.4
3,785,613	-				-0.9
3,785,613	-				-1.3
3,785,613	-				+0.8
3,785,613	-				+0.9