Experiment: L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0685 and Sama_0686 are separated by 86 nucleotides Sama_0686 and Sama_0687 are separated by 54 nucleotides
Sama_0685: Sama_0685 - hypothetical protein (RefSeq), at 846,844 to 848,097
_0685
Sama_0686: Sama_0686 - ROK family protein (RefSeq), at 848,184 to 848,972
_0686
Sama_0687: Sama_0687 - hypothetical protein (RefSeq), at 849,027 to 851,735
_0687
Position (kb) 848
849 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 847.199 kb on + strand, within Sama_0685 at 847.199 kb on + strand, within Sama_0685 at 847.199 kb on + strand, within Sama_0685 at 847.200 kb on - strand, within Sama_0685 at 847.200 kb on - strand, within Sama_0685 at 847.200 kb on - strand, within Sama_0685 at 847.244 kb on - strand, within Sama_0685 at 847.244 kb on - strand, within Sama_0685 at 847.355 kb on + strand, within Sama_0685 at 847.374 kb on + strand, within Sama_0685 at 847.375 kb on - strand, within Sama_0685 at 847.375 kb on - strand, within Sama_0685 at 847.381 kb on + strand, within Sama_0685 at 847.381 kb on + strand, within Sama_0685 at 847.444 kb on + strand, within Sama_0685 at 847.444 kb on + strand, within Sama_0685 at 847.445 kb on - strand, within Sama_0685 at 847.445 kb on - strand, within Sama_0685 at 847.617 kb on + strand, within Sama_0685 at 847.617 kb on + strand, within Sama_0685 at 847.617 kb on + strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.618 kb on - strand, within Sama_0685 at 847.665 kb on + strand, within Sama_0685 at 847.665 kb on + strand, within Sama_0685 at 847.665 kb on + strand, within Sama_0685 at 847.665 kb on + strand, within Sama_0685 at 847.666 kb on - strand, within Sama_0685 at 847.666 kb on - strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.678 kb on + strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.679 kb on - strand, within Sama_0685 at 847.756 kb on + strand, within Sama_0685 at 847.804 kb on + strand, within Sama_0685 at 847.804 kb on + strand, within Sama_0685 at 847.805 kb on - strand, within Sama_0685 at 847.832 kb on + strand, within Sama_0685 at 847.832 kb on + strand, within Sama_0685 at 847.833 kb on - strand, within Sama_0685 at 847.908 kb on - strand, within Sama_0685 at 847.931 kb on + strand, within Sama_0685 at 847.932 kb on - strand, within Sama_0685 at 847.932 kb on - strand, within Sama_0685 at 847.973 kb on + strand at 847.973 kb on + strand at 847.973 kb on + strand at 848.037 kb on + strand at 848.038 kb on - strand at 848.038 kb on - strand at 848.064 kb on + strand at 848.065 kb on - strand at 848.065 kb on - strand at 848.100 kb on + strand at 848.100 kb on + strand at 848.108 kb on + strand at 848.129 kb on + strand at 848.167 kb on + strand at 848.167 kb on + strand at 848.168 kb on - strand at 848.178 kb on + strand at 848.178 kb on + strand at 848.179 kb on - strand at 848.249 kb on + strand at 848.249 kb on + strand at 848.249 kb on + strand at 848.249 kb on + strand at 848.250 kb on - strand at 848.250 kb on - strand at 848.259 kb on + strand at 848.259 kb on + strand at 848.259 kb on + strand at 848.260 kb on - strand at 848.260 kb on - strand at 848.261 kb on + strand at 848.261 kb on + strand at 848.261 kb on + strand at 848.261 kb on + strand at 848.261 kb on + strand at 848.262 kb on - strand at 848.262 kb on - strand at 848.262 kb on - strand at 848.262 kb on - strand at 848.288 kb on + strand, within Sama_0686 at 848.347 kb on - strand, within Sama_0686 at 848.384 kb on + strand, within Sama_0686 at 848.480 kb on + strand, within Sama_0686 at 848.481 kb on - strand, within Sama_0686 at 848.558 kb on + strand, within Sama_0686 at 848.631 kb on - strand, within Sama_0686 at 848.697 kb on - strand, within Sama_0686 at 848.704 kb on + strand, within Sama_0686 at 848.704 kb on + strand, within Sama_0686 at 848.704 kb on + strand, within Sama_0686 at 848.705 kb on - strand, within Sama_0686 at 848.705 kb on - strand, within Sama_0686 at 848.766 kb on - strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.788 kb on + strand, within Sama_0686 at 848.789 kb on - strand, within Sama_0686 at 848.789 kb on - strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.790 kb on + strand, within Sama_0686 at 848.791 kb on - strand, within Sama_0686 at 848.791 kb on - strand, within Sama_0686 at 848.791 kb on - strand, within Sama_0686 at 848.791 kb on - strand, within Sama_0686 at 848.837 kb on + strand, within Sama_0686 at 848.837 kb on + strand, within Sama_0686 at 848.906 kb on + strand at 849.028 kb on + strand at 849.028 kb on + strand at 849.029 kb on - strand at 849.029 kb on - strand at 849.029 kb on - strand at 849.062 kb on - strand at 849.071 kb on + strand at 849.072 kb on - strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.089 kb on + strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.090 kb on - strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.091 kb on + strand at 849.092 kb on - strand at 849.092 kb on - strand at 849.123 kb on - strand at 849.208 kb on - strand at 849.214 kb on - strand at 849.214 kb on - strand at 849.254 kb on - strand at 849.288 kb on + strand at 849.288 kb on + strand at 849.289 kb on - strand at 849.289 kb on - strand at 849.289 kb on - strand at 849.289 kb on - strand at 849.292 kb on + strand at 849.292 kb on + strand at 849.292 kb on + strand at 849.292 kb on + strand at 849.293 kb on - strand at 849.293 kb on - strand at 849.293 kb on - strand at 849.409 kb on + strand, within Sama_0687 at 849.409 kb on + strand, within Sama_0687 at 849.409 kb on + strand, within Sama_0687 at 849.435 kb on - strand, within Sama_0687 at 849.568 kb on - strand, within Sama_0687 at 849.630 kb on - strand, within Sama_0687 at 849.709 kb on + strand, within Sama_0687 at 849.741 kb on - strand, within Sama_0687 at 849.741 kb on - strand, within Sama_0687 at 849.741 kb on - strand, within Sama_0687 at 849.741 kb on - strand, within Sama_0687 at 849.778 kb on + strand, within Sama_0687 at 849.778 kb on + strand, within Sama_0687 at 849.778 kb on + strand, within Sama_0687 at 849.817 kb on + strand, within Sama_0687 at 849.818 kb on - strand, within Sama_0687 at 849.818 kb on - strand, within Sama_0687 at 849.818 kb on - strand, within Sama_0687 at 849.827 kb on + strand, within Sama_0687 at 849.827 kb on + strand, within Sama_0687 at 849.828 kb on - strand, within Sama_0687 at 849.913 kb on + strand, within Sama_0687 at 849.913 kb on + strand, within Sama_0687 at 849.914 kb on - strand, within Sama_0687 at 849.914 kb on - strand, within Sama_0687 at 849.914 kb on - strand, within Sama_0687
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate remove 847,199 + Sama_0685 0.28 -0.3 847,199 + Sama_0685 0.28 +1.7 847,199 + Sama_0685 0.28 +1.5 847,200 - Sama_0685 0.28 +2.2 847,200 - Sama_0685 0.28 +0.2 847,200 - Sama_0685 0.28 -1.3 847,244 - Sama_0685 0.32 -0.2 847,244 - Sama_0685 0.32 -2.8 847,355 + Sama_0685 0.41 +0.6 847,374 + Sama_0685 0.42 +1.0 847,375 - Sama_0685 0.42 -2.2 847,375 - Sama_0685 0.42 -0.1 847,381 + Sama_0685 0.43 +0.2 847,381 + Sama_0685 0.43 -1.8 847,444 + Sama_0685 0.48 +1.9 847,444 + Sama_0685 0.48 +2.0 847,445 - Sama_0685 0.48 -0.8 847,445 - Sama_0685 0.48 +0.5 847,617 + Sama_0685 0.62 -2.2 847,617 + Sama_0685 0.62 -0.5 847,617 + Sama_0685 0.62 +1.0 847,618 - Sama_0685 0.62 -1.3 847,618 - Sama_0685 0.62 -0.1 847,618 - Sama_0685 0.62 -1.5 847,618 - Sama_0685 0.62 +1.2 847,618 - Sama_0685 0.62 +0.7 847,618 - Sama_0685 0.62 -1.5 847,618 - Sama_0685 0.62 -0.7 847,665 + Sama_0685 0.65 +0.2 847,665 + Sama_0685 0.65 +0.1 847,665 + Sama_0685 0.65 +0.3 847,665 + Sama_0685 0.65 +0.3 847,666 - Sama_0685 0.66 +0.0 847,666 - Sama_0685 0.66 +1.3 847,678 + Sama_0685 0.67 +1.4 847,678 + Sama_0685 0.67 +0.6 847,678 + Sama_0685 0.67 -0.2 847,678 + Sama_0685 0.67 -1.3 847,678 + Sama_0685 0.67 -1.2 847,678 + Sama_0685 0.67 +0.0 847,678 + Sama_0685 0.67 -0.2 847,679 - Sama_0685 0.67 +0.8 847,679 - Sama_0685 0.67 +1.4 847,679 - Sama_0685 0.67 -0.6 847,679 - Sama_0685 0.67 -3.5 847,679 - Sama_0685 0.67 +1.0 847,679 - Sama_0685 0.67 -1.7 847,679 - Sama_0685 0.67 -0.3 847,679 - Sama_0685 0.67 -0.6 847,679 - Sama_0685 0.67 -0.5 847,756 + Sama_0685 0.73 +1.0 847,804 + Sama_0685 0.77 +0.7 847,804 + Sama_0685 0.77 +1.4 847,805 - Sama_0685 0.77 -1.4 847,832 + Sama_0685 0.79 +1.3 847,832 + Sama_0685 0.79 +1.6 847,833 - Sama_0685 0.79 +1.6 847,908 - Sama_0685 0.85 +0.0 847,931 + Sama_0685 0.87 +1.0 847,932 - Sama_0685 0.87 -0.4 847,932 - Sama_0685 0.87 -1.8 847,973 + +1.0 847,973 + +0.4 847,973 + +2.3 848,037 + +0.3 848,038 - +0.7 848,038 - +0.8 848,064 + +0.4 848,065 - -1.0 848,065 - +0.0 848,100 + +0.8 848,100 + +2.1 848,108 + +0.6 848,129 + -0.9 848,167 + +1.1 848,167 + +0.7 848,168 - -1.7 848,178 + -0.4 848,178 + -3.1 848,179 - -0.7 848,249 + -0.9 848,249 + -2.3 848,249 + -0.6 848,249 + +0.1 848,250 - -4.2 848,250 - -2.1 848,259 + -0.8 848,259 + -1.1 848,259 + -2.3 848,260 - -1.3 848,260 - -1.0 848,261 + -2.2 848,261 + -2.2 848,261 + -1.8 848,261 + -2.2 848,261 + -2.6 848,262 - -2.9 848,262 - -0.6 848,262 - -1.1 848,262 - -3.1 848,288 + Sama_0686 0.13 -2.5 848,347 - Sama_0686 0.21 -1.5 848,384 + Sama_0686 0.25 -2.0 848,480 + Sama_0686 0.38 -0.7 848,481 - Sama_0686 0.38 -1.4 848,558 + Sama_0686 0.47 -0.3 848,631 - Sama_0686 0.57 -0.4 848,697 - Sama_0686 0.65 -1.9 848,704 + Sama_0686 0.66 -1.5 848,704 + Sama_0686 0.66 -1.8 848,704 + Sama_0686 0.66 -4.0 848,705 - Sama_0686 0.66 -1.7 848,705 - Sama_0686 0.66 -2.9 848,766 - Sama_0686 0.74 -2.8 848,788 + Sama_0686 0.77 -3.6 848,788 + Sama_0686 0.77 -1.3 848,788 + Sama_0686 0.77 -3.2 848,788 + Sama_0686 0.77 -3.1 848,788 + Sama_0686 0.77 -2.8 848,789 - Sama_0686 0.77 -2.1 848,789 - Sama_0686 0.77 -4.2 848,790 + Sama_0686 0.77 -2.3 848,790 + Sama_0686 0.77 +0.0 848,790 + Sama_0686 0.77 -1.8 848,790 + Sama_0686 0.77 -2.4 848,790 + Sama_0686 0.77 -3.7 848,790 + Sama_0686 0.77 -1.8 848,790 + Sama_0686 0.77 -1.7 848,790 + Sama_0686 0.77 -4.1 848,790 + Sama_0686 0.77 -3.4 848,790 + Sama_0686 0.77 -2.0 848,791 - Sama_0686 0.77 -2.9 848,791 - Sama_0686 0.77 -0.2 848,791 - Sama_0686 0.77 -3.2 848,791 - Sama_0686 0.77 -2.8 848,837 + Sama_0686 0.83 -0.4 848,837 + Sama_0686 0.83 -1.2 848,906 + -1.9 849,028 + -2.3 849,028 + -1.3 849,029 - +0.1 849,029 - -0.9 849,029 - -2.0 849,062 - -1.0 849,071 + +2.1 849,072 - -1.2 849,089 + -1.8 849,089 + +0.9 849,089 + -0.9 849,089 + -0.6 849,089 + +1.5 849,089 + -1.0 849,089 + +0.1 849,090 - -1.9 849,090 - -0.3 849,090 - -2.3 849,090 - +0.3 849,090 - -0.0 849,090 - -0.6 849,091 + +0.3 849,091 + +1.0 849,091 + -1.5 849,091 + +0.7 849,091 + +0.3 849,091 + +0.0 849,091 + -0.9 849,091 + -1.0 849,091 + +1.2 849,091 + +0.3 849,092 - -1.3 849,092 - -0.4 849,123 - +1.1 849,208 - -1.9 849,214 - +0.7 849,214 - -2.9 849,254 - -0.5 849,288 + -0.4 849,288 + -0.1 849,289 - +0.7 849,289 - -0.7 849,289 - +0.7 849,289 - +1.0 849,292 + +1.0 849,292 + +1.2 849,292 + +1.0 849,292 + -0.6 849,293 - +2.2 849,293 - -1.7 849,293 - +1.3 849,409 + Sama_0687 0.14 +1.8 849,409 + Sama_0687 0.14 -0.5 849,409 + Sama_0687 0.14 +1.5 849,435 - Sama_0687 0.15 +0.7 849,568 - Sama_0687 0.20 -2.0 849,630 - Sama_0687 0.22 -0.7 849,709 + Sama_0687 0.25 -1.9 849,741 - Sama_0687 0.26 +0.0 849,741 - Sama_0687 0.26 +2.3 849,741 - Sama_0687 0.26 -1.3 849,741 - Sama_0687 0.26 -1.7 849,778 + Sama_0687 0.28 -0.8 849,778 + Sama_0687 0.28 +1.9 849,778 + Sama_0687 0.28 +0.5 849,817 + Sama_0687 0.29 -0.7 849,818 - Sama_0687 0.29 +0.5 849,818 - Sama_0687 0.29 +0.7 849,818 - Sama_0687 0.29 +0.0 849,827 + Sama_0687 0.30 +0.9 849,827 + Sama_0687 0.30 +2.0 849,828 - Sama_0687 0.30 +1.5 849,913 + Sama_0687 0.33 -1.0 849,913 + Sama_0687 0.33 -0.4 849,914 - Sama_0687 0.33 +1.0 849,914 - Sama_0687 0.33 -0.6 849,914 - Sama_0687 0.33 +0.9
Or see this region's nucleotide sequence