Strain Fitness in Shewanella amazonensis SB2B around Sama_0596

Experiment: L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0595 and Sama_0596 are separated by 161 nucleotidesSama_0596 and Sama_0597 are separated by 453 nucleotides Sama_0595: Sama_0595 - sodium:dicarboxylate symporter (RefSeq), at 745,648 to 746,892 _0595 Sama_0596: Sama_0596 - IS1004 transposase (RefSeq), at 747,054 to 747,500 _0596 Sama_0597: Sama_0597 - hypothetical protein (RefSeq), at 747,954 to 748,385 _0597 Position (kb) 747 748Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 746.057 kb on + strand, within Sama_0595at 746.057 kb on + strand, within Sama_0595at 746.057 kb on + strand, within Sama_0595at 746.057 kb on + strand, within Sama_0595at 746.057 kb on + strand, within Sama_0595at 746.057 kb on + strand, within Sama_0595at 746.057 kb on + strand, within Sama_0595at 746.057 kb on + strand, within Sama_0595at 746.057 kb on + strand, within Sama_0595at 746.057 kb on + strand, within Sama_0595at 746.058 kb on - strand, within Sama_0595at 746.058 kb on - strand, within Sama_0595at 746.058 kb on - strand, within Sama_0595at 746.058 kb on - strand, within Sama_0595at 746.058 kb on - strand, within Sama_0595at 746.058 kb on - strand, within Sama_0595at 746.058 kb on - strand, within Sama_0595at 746.058 kb on - strand, within Sama_0595at 746.085 kb on + strand, within Sama_0595at 746.085 kb on + strand, within Sama_0595at 746.085 kb on + strand, within Sama_0595at 746.085 kb on + strand, within Sama_0595at 746.086 kb on - strand, within Sama_0595at 746.086 kb on - strand, within Sama_0595at 746.086 kb on - strand, within Sama_0595at 746.097 kb on + strand, within Sama_0595at 746.097 kb on + strand, within Sama_0595at 746.097 kb on + strand, within Sama_0595at 746.098 kb on - strand, within Sama_0595at 746.115 kb on + strand, within Sama_0595at 746.116 kb on - strand, within Sama_0595at 746.175 kb on - strand, within Sama_0595at 746.175 kb on - strand, within Sama_0595at 746.196 kb on + strand, within Sama_0595at 746.277 kb on + strand, within Sama_0595at 746.277 kb on + strand, within Sama_0595at 746.278 kb on - strand, within Sama_0595at 746.278 kb on - strand, within Sama_0595at 746.314 kb on + strand, within Sama_0595at 746.315 kb on - strand, within Sama_0595at 746.362 kb on + strand, within Sama_0595at 746.368 kb on + strand, within Sama_0595at 746.578 kb on + strand, within Sama_0595at 746.579 kb on - strand, within Sama_0595at 746.579 kb on - strand, within Sama_0595at 746.583 kb on + strand, within Sama_0595at 746.583 kb on + strand, within Sama_0595at 746.583 kb on + strand, within Sama_0595at 746.583 kb on + strand, within Sama_0595at 746.584 kb on - strand, within Sama_0595at 746.584 kb on - strand, within Sama_0595at 746.584 kb on - strand, within Sama_0595at 746.584 kb on - strand, within Sama_0595at 746.619 kb on + strand, within Sama_0595at 746.619 kb on + strand, within Sama_0595at 746.620 kb on - strand, within Sama_0595at 746.620 kb on - strand, within Sama_0595at 746.625 kb on + strand, within Sama_0595at 746.625 kb on + strand, within Sama_0595at 746.625 kb on + strand, within Sama_0595at 746.625 kb on + strand, within Sama_0595at 746.626 kb on - strand, within Sama_0595at 746.661 kb on + strand, within Sama_0595at 746.661 kb on + strand, within Sama_0595at 746.662 kb on - strand, within Sama_0595at 746.727 kb on + strand, within Sama_0595at 746.788 kb on - strandat 746.798 kb on + strandat 746.798 kb on + strandat 746.798 kb on + strandat 746.798 kb on + strandat 746.799 kb on - strandat 746.811 kb on + strandat 746.812 kb on - strandat 746.812 kb on - strandat 746.920 kb on + strandat 746.921 kb on - strandat 746.921 kb on - strandat 746.945 kb on - strandat 746.945 kb on - strandat 746.945 kb on - strandat 746.945 kb on - strandat 746.958 kb on - strandat 747.543 kb on + strandat 747.543 kb on + strandat 747.543 kb on + strandat 747.573 kb on - strandat 747.573 kb on - strandat 747.594 kb on - strandat 747.606 kb on + strandat 747.652 kb on - strandat 747.654 kb on + strandat 747.672 kb on - strandat 747.672 kb on - strandat 747.688 kb on - strandat 747.706 kb on + strandat 747.732 kb on + strandat 747.736 kb on - strandat 747.738 kb on + strandat 747.776 kb on + strandat 747.797 kb on + strandat 747.797 kb on + strandat 747.835 kb on + strandat 747.849 kb on + strandat 747.849 kb on + strandat 747.849 kb on + strandat 747.849 kb on + strandat 747.850 kb on - strandat 747.862 kb on + strandat 747.863 kb on - strandat 747.891 kb on + strandat 747.921 kb on - strandat 747.963 kb on - strandat 748.023 kb on - strand, within Sama_0597at 748.023 kb on - strand, within Sama_0597at 748.086 kb on - strand, within Sama_0597at 748.173 kb on - strand, within Sama_0597at 748.184 kb on + strand, within Sama_0597at 748.253 kb on + strand, within Sama_0597at 748.254 kb on - strand, within Sama_0597at 748.260 kb on + strand, within Sama_0597at 748.261 kb on - strand, within Sama_0597at 748.263 kb on - strand, within Sama_0597at 748.263 kb on - strand, within Sama_0597at 748.304 kb on + strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.305 kb on - strand, within Sama_0597at 748.307 kb on + strand, within Sama_0597at 748.308 kb on - strand, within Sama_0597at 748.344 kb on + strandat 748.344 kb on + strandat 748.345 kb on - strandat 748.381 kb on + strandat 748.382 kb on - strandat 748.382 kb on - strandat 748.389 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate
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746,057 + Sama_0595 0.33 -0.5
746,057 + Sama_0595 0.33 +0.0
746,057 + Sama_0595 0.33 +0.0
746,057 + Sama_0595 0.33 +2.6
746,057 + Sama_0595 0.33 +2.1
746,057 + Sama_0595 0.33 +1.8
746,057 + Sama_0595 0.33 +1.2
746,057 + Sama_0595 0.33 +0.0
746,057 + Sama_0595 0.33 +1.4
746,057 + Sama_0595 0.33 +0.2
746,058 - Sama_0595 0.33 +2.8
746,058 - Sama_0595 0.33 +0.2
746,058 - Sama_0595 0.33 +4.5
746,058 - Sama_0595 0.33 +1.5
746,058 - Sama_0595 0.33 +2.0
746,058 - Sama_0595 0.33 +1.5
746,058 - Sama_0595 0.33 +2.4
746,058 - Sama_0595 0.33 +2.3
746,085 + Sama_0595 0.35 -1.1
746,085 + Sama_0595 0.35 +1.0
746,085 + Sama_0595 0.35 +0.8
746,085 + Sama_0595 0.35 +2.2
746,086 - Sama_0595 0.35 +1.2
746,086 - Sama_0595 0.35 +0.5
746,086 - Sama_0595 0.35 +1.0
746,097 + Sama_0595 0.36 +1.0
746,097 + Sama_0595 0.36 +0.8
746,097 + Sama_0595 0.36 +0.5
746,098 - Sama_0595 0.36 +1.0
746,115 + Sama_0595 0.38 -1.3
746,116 - Sama_0595 0.38 -0.1
746,175 - Sama_0595 0.42 +1.0
746,175 - Sama_0595 0.42 +2.5
746,196 + Sama_0595 0.44 -1.0
746,277 + Sama_0595 0.51 -2.1
746,277 + Sama_0595 0.51 +1.8
746,278 - Sama_0595 0.51 +1.6
746,278 - Sama_0595 0.51 +0.3
746,314 + Sama_0595 0.53 +1.7
746,315 - Sama_0595 0.54 -1.8
746,362 + Sama_0595 0.57 +1.2
746,368 + Sama_0595 0.58 +0.6
746,578 + Sama_0595 0.75 -1.4
746,579 - Sama_0595 0.75 +1.8
746,579 - Sama_0595 0.75 +0.1
746,583 + Sama_0595 0.75 +0.3
746,583 + Sama_0595 0.75 +4.2
746,583 + Sama_0595 0.75 +0.8
746,583 + Sama_0595 0.75 +3.2
746,584 - Sama_0595 0.75 +0.9
746,584 - Sama_0595 0.75 +0.5
746,584 - Sama_0595 0.75 +1.0
746,584 - Sama_0595 0.75 +2.0
746,619 + Sama_0595 0.78 +2.0
746,619 + Sama_0595 0.78 +1.2
746,620 - Sama_0595 0.78 -0.4
746,620 - Sama_0595 0.78 -0.5
746,625 + Sama_0595 0.78 +0.4
746,625 + Sama_0595 0.78 +1.5
746,625 + Sama_0595 0.78 +1.4
746,625 + Sama_0595 0.78 +1.8
746,626 - Sama_0595 0.79 +2.0
746,661 + Sama_0595 0.81 +2.3
746,661 + Sama_0595 0.81 +0.0
746,662 - Sama_0595 0.81 -2.0
746,727 + Sama_0595 0.87 +0.0
746,788 - +2.0
746,798 + +2.2
746,798 + +0.3
746,798 + +0.8
746,798 + -0.5
746,799 - +1.4
746,811 + +1.1
746,812 - +1.6
746,812 - +1.8
746,920 + +1.2
746,921 - +0.6
746,921 - -1.8
746,945 - -2.9
746,945 - +0.4
746,945 - -0.8
746,945 - +2.0
746,958 - -0.3
747,543 + -0.7
747,543 + +0.8
747,543 + -1.3
747,573 - +1.3
747,573 - -2.0
747,594 - +0.0
747,606 + -1.5
747,652 - +2.2
747,654 + +0.8
747,672 - +0.5
747,672 - -1.1
747,688 - +0.5
747,706 + +0.8
747,732 + +1.6
747,736 - -0.1
747,738 + -1.7
747,776 + -0.2
747,797 + -0.4
747,797 + +0.7
747,835 + -0.0
747,849 + -1.1
747,849 + +0.2
747,849 + +2.5
747,849 + +1.0
747,850 - +1.0
747,862 + +1.7
747,863 - -0.4
747,891 + +0.7
747,921 - +1.8
747,963 - +1.0
748,023 - Sama_0597 0.16 +1.5
748,023 - Sama_0597 0.16 -0.1
748,086 - Sama_0597 0.31 -0.2
748,173 - Sama_0597 0.51 -2.1
748,184 + Sama_0597 0.53 +2.0
748,253 + Sama_0597 0.69 +1.6
748,254 - Sama_0597 0.69 -0.1
748,260 + Sama_0597 0.71 -1.0
748,261 - Sama_0597 0.71 +0.0
748,263 - Sama_0597 0.72 -1.3
748,263 - Sama_0597 0.72 +1.3
748,304 + Sama_0597 0.81 -0.2
748,305 - Sama_0597 0.81 +1.8
748,305 - Sama_0597 0.81 +1.6
748,305 - Sama_0597 0.81 -1.5
748,305 - Sama_0597 0.81 +0.9
748,305 - Sama_0597 0.81 +1.0
748,307 + Sama_0597 0.82 +1.1
748,308 - Sama_0597 0.82 +2.0
748,344 + +0.4
748,344 + +1.7
748,345 - -0.4
748,381 + +1.0
748,382 - -1.2
748,382 - -2.0
748,389 + +0.7

Or see this region's nucleotide sequence