Strain Fitness in Shewanella amazonensis SB2B around Sama_0588

Experiment: L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0587 and Sama_0588 are separated by 3 nucleotidesSama_0588 and Sama_0589 are separated by 54 nucleotides Sama_0587: Sama_0587 - PepSY-associated TM helix (RefSeq), at 733,548 to 734,306 _0587 Sama_0588: Sama_0588 - FMN-binding (RefSeq), at 734,310 to 734,819 _0588 Sama_0589: Sama_0589 - phosphate-selective porin O and P (RefSeq), at 734,874 to 736,049 _0589 Position (kb) 734 735Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.336 kb on - strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.351 kb on - strandat 733.493 kb on + strandat 733.507 kb on + strandat 733.516 kb on + strandat 733.516 kb on + strandat 733.549 kb on + strandat 733.550 kb on - strandat 733.573 kb on - strandat 733.583 kb on - strandat 733.583 kb on - strandat 733.605 kb on + strandat 733.606 kb on - strandat 733.725 kb on + strand, within Sama_0587at 733.726 kb on - strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.817 kb on - strand, within Sama_0587at 733.914 kb on + strand, within Sama_0587at 733.915 kb on - strand, within Sama_0587at 733.942 kb on + strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.025 kb on - strand, within Sama_0587at 734.062 kb on + strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.116 kb on - strand, within Sama_0587at 734.170 kb on - strand, within Sama_0587at 734.176 kb on - strand, within Sama_0587at 734.217 kb on - strand, within Sama_0587at 734.276 kb on + strandat 734.277 kb on - strandat 734.286 kb on - strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.342 kb on - strandat 734.342 kb on - strandat 734.376 kb on + strand, within Sama_0588at 734.409 kb on - strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.504 kb on - strand, within Sama_0588at 734.505 kb on + strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.511 kb on + strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.526 kb on + strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.561 kb on + strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.620 kb on + strand, within Sama_0588at 734.626 kb on - strand, within Sama_0588at 734.641 kb on + strand, within Sama_0588at 734.642 kb on - strand, within Sama_0588at 734.682 kb on - strand, within Sama_0588at 734.748 kb on - strand, within Sama_0588at 734.809 kb on + strandat 734.809 kb on + strandat 734.810 kb on - strandat 734.810 kb on - strandat 734.839 kb on + strandat 734.839 kb on + strandat 734.840 kb on - strandat 734.851 kb on + strandat 734.851 kb on + strandat 734.862 kb on + strandat 734.863 kb on - strandat 734.863 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.885 kb on - strandat 734.953 kb on - strandat 734.953 kb on - strandat 734.974 kb on + strandat 734.975 kb on - strandat 734.981 kb on + strandat 734.981 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 735.098 kb on - strand, within Sama_0589at 735.098 kb on - strand, within Sama_0589at 735.163 kb on + strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.197 kb on - strand, within Sama_0589at 735.201 kb on - strand, within Sama_0589at 735.237 kb on + strand, within Sama_0589at 735.238 kb on - strand, within Sama_0589at 735.248 kb on + strand, within Sama_0589at 735.331 kb on + strand, within Sama_0589at 735.331 kb on + strand, within Sama_0589at 735.332 kb on - strand, within Sama_0589at 735.332 kb on - strand, within Sama_0589at 735.332 kb on - strand, within Sama_0589at 735.382 kb on - strand, within Sama_0589at 735.382 kb on - strand, within Sama_0589at 735.388 kb on + strand, within Sama_0589at 735.388 kb on + strand, within Sama_0589at 735.389 kb on - strand, within Sama_0589at 735.389 kb on - strand, within Sama_0589at 735.389 kb on - strand, within Sama_0589at 735.492 kb on + strand, within Sama_0589at 735.493 kb on - strand, within Sama_0589at 735.493 kb on - strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.515 kb on + strand, within Sama_0589at 735.515 kb on + strand, within Sama_0589at 735.516 kb on - strand, within Sama_0589at 735.516 kb on - strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.593 kb on + strand, within Sama_0589at 735.593 kb on + strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.603 kb on - strand, within Sama_0589at 735.603 kb on - strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.629 kb on - strand, within Sama_0589at 735.629 kb on - strand, within Sama_0589at 735.629 kb on - strand, within Sama_0589at 735.714 kb on - strand, within Sama_0589at 735.714 kb on - strand, within Sama_0589at 735.714 kb on - strand, within Sama_0589at 735.742 kb on - strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.809 kb on - strand, within Sama_0589at 735.809 kb on - strand, within Sama_0589

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate
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733,335 + -1.0
733,335 + -1.4
733,335 + -2.6
733,335 + -1.8
733,335 + -0.3
733,335 + +0.0
733,336 - -1.4
733,350 + +1.6
733,350 + -2.6
733,350 + -1.6
733,350 + +0.3
733,350 + -1.6
733,351 - -1.3
733,493 + -1.3
733,507 + -0.7
733,516 + -0.3
733,516 + -1.6
733,549 + -0.6
733,550 - +0.3
733,573 - +2.0
733,583 - +0.5
733,583 - -0.8
733,605 + +1.2
733,606 - +3.6
733,725 + Sama_0587 0.23 +2.0
733,726 - Sama_0587 0.23 +2.2
733,816 + Sama_0587 0.35 -0.3
733,816 + Sama_0587 0.35 +1.0
733,817 - Sama_0587 0.35 +1.4
733,914 + Sama_0587 0.48 +4.1
733,915 - Sama_0587 0.48 +0.4
733,942 + Sama_0587 0.52 +3.8
733,943 - Sama_0587 0.52 +0.7
733,943 - Sama_0587 0.52 +0.8
733,943 - Sama_0587 0.52 +1.0
733,943 - Sama_0587 0.52 +0.0
734,024 + Sama_0587 0.63 +0.9
734,024 + Sama_0587 0.63 +2.2
734,024 + Sama_0587 0.63 -1.6
734,025 - Sama_0587 0.63 -2.1
734,062 + Sama_0587 0.68 +1.7
734,063 - Sama_0587 0.68 +2.4
734,063 - Sama_0587 0.68 +0.9
734,063 - Sama_0587 0.68 -1.6
734,104 + Sama_0587 0.73 -0.2
734,104 + Sama_0587 0.73 +2.0
734,105 - Sama_0587 0.73 +1.4
734,105 - Sama_0587 0.73 -1.4
734,107 + Sama_0587 0.74 -0.1
734,107 + Sama_0587 0.74 -0.6
734,116 - Sama_0587 0.75 +0.4
734,170 - Sama_0587 0.82 +2.9
734,176 - Sama_0587 0.83 -1.6
734,217 - Sama_0587 0.88 +2.4
734,276 + +1.4
734,277 - +0.4
734,286 - -0.4
734,341 + -0.5
734,341 + +1.3
734,341 + +0.2
734,341 + -0.8
734,342 - -2.3
734,342 - +2.6
734,376 + Sama_0588 0.13 +0.7
734,409 - Sama_0588 0.19 -1.9
734,503 + Sama_0588 0.38 -3.0
734,503 + Sama_0588 0.38 +0.6
734,504 - Sama_0588 0.38 +0.7
734,505 + Sama_0588 0.38 +2.4
734,506 - Sama_0588 0.38 +0.5
734,506 - Sama_0588 0.38 +3.1
734,511 + Sama_0588 0.39 -0.1
734,512 - Sama_0588 0.40 +0.0
734,512 - Sama_0588 0.40 +1.0
734,526 + Sama_0588 0.42 +2.4
734,527 - Sama_0588 0.43 +1.5
734,527 - Sama_0588 0.43 -1.6
734,561 + Sama_0588 0.49 -2.8
734,562 - Sama_0588 0.49 -1.6
734,562 - Sama_0588 0.49 -1.7
734,620 + Sama_0588 0.61 +0.3
734,626 - Sama_0588 0.62 -0.1
734,641 + Sama_0588 0.65 -0.6
734,642 - Sama_0588 0.65 +0.7
734,682 - Sama_0588 0.73 +0.0
734,748 - Sama_0588 0.86 +2.3
734,809 + -0.6
734,809 + -0.6
734,810 - +2.0
734,810 - -1.6
734,839 + -1.0
734,839 + -0.6
734,840 - -0.1
734,851 + +0.6
734,851 + +1.3
734,862 + +1.4
734,863 - -0.0
734,863 - +2.0
734,867 - -1.2
734,867 - +1.4
734,867 - -1.6
734,885 - +0.8
734,953 - -1.3
734,953 - +1.2
734,974 + -0.6
734,975 - +1.0
734,981 + +1.4
734,981 - +0.0
734,982 - +0.5
734,982 - +1.4
734,982 - +1.9
734,982 - +1.0
734,985 + +1.5
734,985 + +1.7
734,985 + -0.4
734,985 + -1.3
734,985 + -0.3
734,986 - -0.2
734,986 - +1.2
734,986 - +1.0
734,986 - +1.7
734,986 - -0.6
735,098 - Sama_0589 0.19 +1.9
735,098 - Sama_0589 0.19 -0.3
735,163 + Sama_0589 0.25 +0.9
735,164 - Sama_0589 0.25 +2.1
735,164 - Sama_0589 0.25 +0.4
735,180 - Sama_0589 0.26 +0.9
735,180 - Sama_0589 0.26 +0.6
735,180 - Sama_0589 0.26 -0.6
735,180 - Sama_0589 0.26 +1.4
735,197 - Sama_0589 0.27 -2.1
735,201 - Sama_0589 0.28 +1.0
735,237 + Sama_0589 0.31 -1.1
735,238 - Sama_0589 0.31 +2.4
735,248 + Sama_0589 0.32 +1.9
735,331 + Sama_0589 0.39 +1.0
735,331 + Sama_0589 0.39 +2.3
735,332 - Sama_0589 0.39 +5.0
735,332 - Sama_0589 0.39 +2.4
735,332 - Sama_0589 0.39 +2.4
735,382 - Sama_0589 0.43 +1.5
735,382 - Sama_0589 0.43 -1.0
735,388 + Sama_0589 0.44 +2.0
735,388 + Sama_0589 0.44 -1.6
735,389 - Sama_0589 0.44 -0.4
735,389 - Sama_0589 0.44 +1.2
735,389 - Sama_0589 0.44 +1.9
735,492 + Sama_0589 0.53 +1.6
735,493 - Sama_0589 0.53 -0.3
735,493 - Sama_0589 0.53 +1.6
735,495 + Sama_0589 0.53 +0.4
735,495 + Sama_0589 0.53 -2.1
735,495 + Sama_0589 0.53 +1.4
735,495 + Sama_0589 0.53 +0.8
735,495 + Sama_0589 0.53 +0.9
735,495 + Sama_0589 0.53 -1.3
735,496 - Sama_0589 0.53 -0.3
735,496 - Sama_0589 0.53 +0.0
735,496 - Sama_0589 0.53 +1.5
735,496 - Sama_0589 0.53 +2.5
735,496 - Sama_0589 0.53 +0.8
735,496 - Sama_0589 0.53 +2.4
735,496 - Sama_0589 0.53 +0.5
735,496 - Sama_0589 0.53 -1.3
735,515 + Sama_0589 0.55 +1.6
735,515 + Sama_0589 0.55 +2.0
735,516 - Sama_0589 0.55 +1.8
735,516 - Sama_0589 0.55 -0.6
735,529 + Sama_0589 0.56 +1.6
735,529 + Sama_0589 0.56 +3.0
735,529 + Sama_0589 0.56 -1.8
735,529 + Sama_0589 0.56 +2.3
735,593 + Sama_0589 0.61 -1.0
735,593 + Sama_0589 0.61 +0.8
735,594 - Sama_0589 0.61 +1.6
735,594 - Sama_0589 0.61 +1.7
735,594 - Sama_0589 0.61 -0.4
735,594 - Sama_0589 0.61 -0.2
735,603 - Sama_0589 0.62 -1.1
735,603 - Sama_0589 0.62 +0.0
735,628 + Sama_0589 0.64 +1.4
735,628 + Sama_0589 0.64 -1.8
735,628 + Sama_0589 0.64 +1.9
735,628 + Sama_0589 0.64 +3.3
735,629 - Sama_0589 0.64 +0.0
735,629 - Sama_0589 0.64 +0.9
735,629 - Sama_0589 0.64 -0.6
735,714 - Sama_0589 0.71 +1.4
735,714 - Sama_0589 0.71 +2.2
735,714 - Sama_0589 0.71 +0.4
735,742 - Sama_0589 0.74 -1.1
735,808 + Sama_0589 0.79 -0.6
735,808 + Sama_0589 0.79 -2.8
735,808 + Sama_0589 0.79 -2.6
735,808 + Sama_0589 0.79 -0.6
735,808 + Sama_0589 0.79 +0.8
735,808 + Sama_0589 0.79 +3.4
735,809 - Sama_0589 0.80 +0.8
735,809 - Sama_0589 0.80 +0.7

Or see this region's nucleotide sequence