Strain Fitness in Shewanella amazonensis SB2B around Sama_0516

Experiment: L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0515 and Sama_0516 are separated by 35 nucleotidesSama_0516 and Sama_0517 are separated by 126 nucleotides Sama_0515: Sama_0515 - transporter, putative (RefSeq), at 634,698 to 636,065 _0515 Sama_0516: Sama_0516 - single-strand binding protein (RefSeq), at 636,101 to 636,805 _0516 Sama_0517: Sama_0517 - D-beta-hydroxybutyrate dehydrogenase (RefSeq), at 636,932 to 637,732 _0517 Position (kb) 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 635.126 kb on + strand, within Sama_0515at 635.127 kb on - strand, within Sama_0515at 635.127 kb on - strand, within Sama_0515at 635.180 kb on + strand, within Sama_0515at 635.180 kb on + strand, within Sama_0515at 635.239 kb on + strand, within Sama_0515at 635.288 kb on + strand, within Sama_0515at 635.358 kb on - strand, within Sama_0515at 635.358 kb on - strand, within Sama_0515at 635.363 kb on + strand, within Sama_0515at 635.363 kb on + strand, within Sama_0515at 635.364 kb on - strand, within Sama_0515at 635.454 kb on + strand, within Sama_0515at 635.455 kb on - strand, within Sama_0515at 635.469 kb on - strand, within Sama_0515at 635.498 kb on + strand, within Sama_0515at 635.498 kb on + strand, within Sama_0515at 635.519 kb on + strand, within Sama_0515at 635.520 kb on - strand, within Sama_0515at 635.645 kb on + strand, within Sama_0515at 635.645 kb on + strand, within Sama_0515at 635.646 kb on - strand, within Sama_0515at 635.646 kb on - strand, within Sama_0515at 635.649 kb on + strand, within Sama_0515at 635.650 kb on - strand, within Sama_0515at 635.724 kb on + strand, within Sama_0515at 635.724 kb on + strand, within Sama_0515at 635.725 kb on - strand, within Sama_0515at 635.886 kb on + strand, within Sama_0515at 635.886 kb on + strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.887 kb on - strand, within Sama_0515at 635.905 kb on + strand, within Sama_0515at 635.905 kb on + strand, within Sama_0515at 635.906 kb on - strand, within Sama_0515at 635.962 kb on + strandat 635.963 kb on - strandat 636.000 kb on + strandat 636.028 kb on + strandat 636.810 kb on + strandat 636.819 kb on + strandat 636.819 kb on + strandat 636.819 kb on + strandat 636.820 kb on - strandat 636.820 kb on - strandat 636.820 kb on - strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.821 kb on + strandat 636.822 kb on - strandat 636.822 kb on - strandat 636.822 kb on - strandat 636.822 kb on - strandat 636.822 kb on - strandat 636.822 kb on - strandat 637.022 kb on + strand, within Sama_0517at 637.022 kb on + strand, within Sama_0517at 637.022 kb on + strand, within Sama_0517at 637.077 kb on + strand, within Sama_0517at 637.077 kb on + strand, within Sama_0517at 637.078 kb on - strand, within Sama_0517at 637.092 kb on + strand, within Sama_0517at 637.093 kb on - strand, within Sama_0517at 637.093 kb on - strand, within Sama_0517at 637.105 kb on + strand, within Sama_0517at 637.106 kb on - strand, within Sama_0517at 637.106 kb on - strand, within Sama_0517at 637.124 kb on + strand, within Sama_0517at 637.124 kb on + strand, within Sama_0517at 637.124 kb on + strand, within Sama_0517at 637.124 kb on + strand, within Sama_0517at 637.125 kb on - strand, within Sama_0517at 637.125 kb on - strand, within Sama_0517at 637.125 kb on - strand, within Sama_0517at 637.125 kb on - strand, within Sama_0517at 637.132 kb on + strand, within Sama_0517at 637.132 kb on + strand, within Sama_0517at 637.133 kb on - strand, within Sama_0517at 637.133 kb on - strand, within Sama_0517at 637.133 kb on - strand, within Sama_0517at 637.133 kb on - strand, within Sama_0517at 637.133 kb on - strand, within Sama_0517at 637.147 kb on + strand, within Sama_0517at 637.147 kb on + strand, within Sama_0517at 637.180 kb on + strand, within Sama_0517at 637.181 kb on - strand, within Sama_0517at 637.231 kb on + strand, within Sama_0517at 637.231 kb on + strand, within Sama_0517at 637.231 kb on + strand, within Sama_0517at 637.231 kb on + strand, within Sama_0517at 637.231 kb on + strand, within Sama_0517at 637.232 kb on - strand, within Sama_0517at 637.232 kb on - strand, within Sama_0517at 637.252 kb on - strand, within Sama_0517at 637.297 kb on + strand, within Sama_0517at 637.298 kb on - strand, within Sama_0517at 637.298 kb on - strand, within Sama_0517at 637.298 kb on - strand, within Sama_0517at 637.453 kb on + strand, within Sama_0517at 637.453 kb on + strand, within Sama_0517at 637.454 kb on - strand, within Sama_0517at 637.454 kb on - strand, within Sama_0517at 637.495 kb on + strand, within Sama_0517at 637.496 kb on - strand, within Sama_0517at 637.523 kb on + strand, within Sama_0517at 637.523 kb on + strand, within Sama_0517at 637.523 kb on + strand, within Sama_0517at 637.523 kb on + strand, within Sama_0517at 637.524 kb on - strand, within Sama_0517at 637.524 kb on - strand, within Sama_0517at 637.524 kb on - strand, within Sama_0517at 637.524 kb on - strand, within Sama_0517at 637.524 kb on - strand, within Sama_0517at 637.524 kb on - strand, within Sama_0517at 637.557 kb on + strand, within Sama_0517at 637.582 kb on + strand, within Sama_0517at 637.583 kb on - strand, within Sama_0517at 637.583 kb on - strand, within Sama_0517at 637.619 kb on + strand, within Sama_0517at 637.620 kb on - strand, within Sama_0517at 637.647 kb on - strand, within Sama_0517at 637.690 kb on + strandat 637.691 kb on - strandat 637.710 kb on - strandat 637.710 kb on - strandat 637.710 kb on - strandat 637.710 kb on - strandat 637.733 kb on + strandat 637.733 kb on + strandat 637.734 kb on - strandat 637.734 kb on - strandat 637.734 kb on - strandat 637.762 kb on + strandat 637.762 kb on + strandat 637.762 kb on + strandat 637.762 kb on + strandat 637.762 kb on + strandat 637.762 kb on + strandat 637.762 kb on + strandat 637.762 kb on + strandat 637.762 kb on + strandat 637.762 kb on + strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strandat 637.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate
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635,126 + Sama_0515 0.31 -0.5
635,127 - Sama_0515 0.31 +1.6
635,127 - Sama_0515 0.31 +0.6
635,180 + Sama_0515 0.35 +0.9
635,180 + Sama_0515 0.35 +1.2
635,239 + Sama_0515 0.40 +3.2
635,288 + Sama_0515 0.43 +1.1
635,358 - Sama_0515 0.48 +1.7
635,358 - Sama_0515 0.48 +1.4
635,363 + Sama_0515 0.49 +2.4
635,363 + Sama_0515 0.49 +0.1
635,364 - Sama_0515 0.49 -2.5
635,454 + Sama_0515 0.55 +1.2
635,455 - Sama_0515 0.55 +2.0
635,469 - Sama_0515 0.56 +0.6
635,498 + Sama_0515 0.58 +1.3
635,498 + Sama_0515 0.58 +2.8
635,519 + Sama_0515 0.60 +2.6
635,520 - Sama_0515 0.60 +1.4
635,645 + Sama_0515 0.69 +1.7
635,645 + Sama_0515 0.69 +1.5
635,646 - Sama_0515 0.69 +0.9
635,646 - Sama_0515 0.69 +2.2
635,649 + Sama_0515 0.70 -0.2
635,650 - Sama_0515 0.70 +1.1
635,724 + Sama_0515 0.75 +4.1
635,724 + Sama_0515 0.75 +2.1
635,725 - Sama_0515 0.75 +1.2
635,886 + Sama_0515 0.87 -0.2
635,886 + Sama_0515 0.87 +0.9
635,887 - Sama_0515 0.87 +1.5
635,887 - Sama_0515 0.87 -2.1
635,887 - Sama_0515 0.87 +1.7
635,887 - Sama_0515 0.87 +1.0
635,887 - Sama_0515 0.87 +1.2
635,887 - Sama_0515 0.87 +0.7
635,905 + Sama_0515 0.88 -0.2
635,905 + Sama_0515 0.88 +0.8
635,906 - Sama_0515 0.88 -0.5
635,962 + -1.2
635,963 - +2.2
636,000 + +1.3
636,028 + +1.9
636,810 + -1.7
636,819 + +1.3
636,819 + +1.9
636,819 + -0.1
636,820 - -0.9
636,820 - +2.3
636,820 - +0.4
636,821 + -0.3
636,821 + -1.7
636,821 + -0.3
636,821 + +1.5
636,821 + -1.9
636,821 + -1.7
636,821 + -0.6
636,821 + -1.9
636,821 + +0.7
636,821 + -0.7
636,821 + -0.2
636,821 + -1.5
636,821 + +2.2
636,821 + -0.9
636,821 + -0.1
636,821 + +0.5
636,821 + -1.2
636,821 + +2.1
636,822 - -1.2
636,822 - -0.6
636,822 - +1.4
636,822 - +2.3
636,822 - +1.2
636,822 - -2.7
637,022 + Sama_0517 0.11 +1.7
637,022 + Sama_0517 0.11 -0.5
637,022 + Sama_0517 0.11 -1.0
637,077 + Sama_0517 0.18 -2.1
637,077 + Sama_0517 0.18 -0.7
637,078 - Sama_0517 0.18 +1.2
637,092 + Sama_0517 0.20 -0.1
637,093 - Sama_0517 0.20 +0.1
637,093 - Sama_0517 0.20 +1.4
637,105 + Sama_0517 0.22 +1.5
637,106 - Sama_0517 0.22 +1.5
637,106 - Sama_0517 0.22 -0.7
637,124 + Sama_0517 0.24 -0.9
637,124 + Sama_0517 0.24 -0.0
637,124 + Sama_0517 0.24 -1.6
637,124 + Sama_0517 0.24 -3.4
637,125 - Sama_0517 0.24 +1.1
637,125 - Sama_0517 0.24 +2.7
637,125 - Sama_0517 0.24 +1.7
637,125 - Sama_0517 0.24 +2.1
637,132 + Sama_0517 0.25 -2.5
637,132 + Sama_0517 0.25 +0.2
637,133 - Sama_0517 0.25 -1.2
637,133 - Sama_0517 0.25 -1.8
637,133 - Sama_0517 0.25 -0.9
637,133 - Sama_0517 0.25 -0.1
637,133 - Sama_0517 0.25 +0.4
637,147 + Sama_0517 0.27 -0.6
637,147 + Sama_0517 0.27 -1.9
637,180 + Sama_0517 0.31 +0.0
637,181 - Sama_0517 0.31 +0.1
637,231 + Sama_0517 0.37 -0.1
637,231 + Sama_0517 0.37 -0.3
637,231 + Sama_0517 0.37 -1.8
637,231 + Sama_0517 0.37 +1.7
637,231 + Sama_0517 0.37 +2.2
637,232 - Sama_0517 0.37 -0.9
637,232 - Sama_0517 0.37 +0.2
637,252 - Sama_0517 0.40 -0.8
637,297 + Sama_0517 0.46 +0.1
637,298 - Sama_0517 0.46 -0.1
637,298 - Sama_0517 0.46 +1.1
637,298 - Sama_0517 0.46 -0.4
637,453 + Sama_0517 0.65 -0.4
637,453 + Sama_0517 0.65 -3.4
637,454 - Sama_0517 0.65 +0.1
637,454 - Sama_0517 0.65 +0.4
637,495 + Sama_0517 0.70 +2.1
637,496 - Sama_0517 0.70 +1.2
637,523 + Sama_0517 0.74 +1.1
637,523 + Sama_0517 0.74 +0.5
637,523 + Sama_0517 0.74 +0.4
637,523 + Sama_0517 0.74 +3.2
637,524 - Sama_0517 0.74 -0.6
637,524 - Sama_0517 0.74 -0.9
637,524 - Sama_0517 0.74 -1.4
637,524 - Sama_0517 0.74 +0.9
637,524 - Sama_0517 0.74 +0.7
637,524 - Sama_0517 0.74 -0.0
637,557 + Sama_0517 0.78 +0.1
637,582 + Sama_0517 0.81 -2.0
637,583 - Sama_0517 0.81 +1.2
637,583 - Sama_0517 0.81 -0.1
637,619 + Sama_0517 0.86 -0.6
637,620 - Sama_0517 0.86 +0.3
637,647 - Sama_0517 0.89 +0.9
637,690 + -1.5
637,691 - +1.6
637,710 - +1.6
637,710 - +0.1
637,710 - -2.1
637,710 - -1.5
637,733 + +0.5
637,733 + +1.2
637,734 - -1.3
637,734 - -0.5
637,734 - +0.2
637,762 + -0.6
637,762 + +0.3
637,762 + +1.4
637,762 + +1.0
637,762 + +1.3
637,762 + +1.2
637,762 + -1.2
637,762 + -0.9
637,762 + -1.2
637,762 + -0.4
637,763 - -0.1
637,763 - -1.2
637,763 - -0.9
637,763 - -0.6
637,763 - +1.5
637,763 - +0.4
637,763 - -0.2
637,763 - +1.1
637,763 - -0.4
637,763 - -2.5
637,763 - -0.5
637,763 - -0.8

Or see this region's nucleotide sequence