Strain Fitness in Shewanella amazonensis SB2B around Sama_0041

Experiment: L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrkA and Sama_0041 are separated by 17 nucleotidesSama_0041 and Sama_0042 overlap by 1 nucleotidesSama_0042 and def are separated by 15 nucleotides Sama_0040: trkA - potassium transporter peripheral membrane component (RefSeq), at 43,378 to 44,787 trkA Sama_0041: Sama_0041 - sun protein (RefSeq), at 44,805 to 46,088 _0041 Sama_0042: Sama_0042 - methionyl-tRNA formyltransferase (RefSeq), at 46,088 to 47,050 _0042 Sama_0043: def - peptide deformylase (RefSeq), at 47,066 to 47,569 def Position (kb) 44 45 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 44.799 kb on - strandat 44.836 kb on + strandat 44.837 kb on - strandat 44.837 kb on - strandat 44.837 kb on - strandat 44.883 kb on - strandat 44.889 kb on - strandat 44.889 kb on - strandat 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.018 kb on - strand, within Sama_0041at 45.357 kb on + strand, within Sama_0041at 45.358 kb on - strand, within Sama_0041at 45.358 kb on - strand, within Sama_0041at 45.358 kb on - strand, within Sama_0041at 45.513 kb on + strand, within Sama_0041at 45.514 kb on - strand, within Sama_0041at 45.542 kb on - strand, within Sama_0041at 45.542 kb on - strand, within Sama_0041at 45.542 kb on - strand, within Sama_0041at 45.542 kb on - strand, within Sama_0041at 45.575 kb on + strand, within Sama_0041at 45.576 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.610 kb on - strand, within Sama_0041at 45.675 kb on - strand, within Sama_0041at 45.675 kb on - strand, within Sama_0041at 45.676 kb on + strand, within Sama_0041at 45.677 kb on - strand, within Sama_0041at 45.677 kb on - strand, within Sama_0041at 45.677 kb on - strand, within Sama_0041at 45.725 kb on + strand, within Sama_0041at 45.726 kb on - strand, within Sama_0041at 45.726 kb on - strand, within Sama_0041at 45.726 kb on - strand, within Sama_0041at 45.726 kb on - strand, within Sama_0041at 45.753 kb on + strand, within Sama_0041at 45.753 kb on + strand, within Sama_0041at 45.753 kb on + strand, within Sama_0041at 45.753 kb on + strand, within Sama_0041at 45.832 kb on + strand, within Sama_0041at 45.832 kb on + strand, within Sama_0041at 45.832 kb on + strand, within Sama_0041at 45.832 kb on + strand, within Sama_0041at 45.832 kb on + strand, within Sama_0041at 45.833 kb on - strand, within Sama_0041at 45.833 kb on - strand, within Sama_0041at 45.833 kb on - strand, within Sama_0041at 45.841 kb on + strand, within Sama_0041at 45.841 kb on + strand, within Sama_0041at 45.841 kb on + strand, within Sama_0041at 45.855 kb on + strand, within Sama_0041at 45.856 kb on - strand, within Sama_0041at 45.856 kb on - strand, within Sama_0041at 45.856 kb on - strand, within Sama_0041at 45.856 kb on - strand, within Sama_0041at 45.902 kb on + strand, within Sama_0041at 45.902 kb on + strand, within Sama_0041at 45.902 kb on + strand, within Sama_0041at 45.902 kb on + strand, within Sama_0041at 45.902 kb on + strand, within Sama_0041at 45.902 kb on + strand, within Sama_0041at 45.902 kb on + strand, within Sama_0041at 45.903 kb on - strand, within Sama_0041at 45.903 kb on - strand, within Sama_0041at 45.903 kb on - strand, within Sama_0041at 45.903 kb on - strand, within Sama_0041at 45.903 kb on - strand, within Sama_0041at 45.903 kb on - strand, within Sama_0041at 45.903 kb on - strand, within Sama_0041at 45.903 kb on - strand, within Sama_0041at 45.904 kb on + strand, within Sama_0041at 45.904 kb on + strand, within Sama_0041at 45.904 kb on + strand, within Sama_0041at 45.904 kb on + strand, within Sama_0041at 45.904 kb on + strand, within Sama_0041at 45.904 kb on + strand, within Sama_0041at 45.904 kb on + strand, within Sama_0041at 45.904 kb on + strand, within Sama_0041at 45.905 kb on - strand, within Sama_0041at 45.905 kb on - strand, within Sama_0041at 45.905 kb on - strand, within Sama_0041at 45.905 kb on - strand, within Sama_0041at 45.905 kb on - strand, within Sama_0041at 45.905 kb on - strand, within Sama_0041at 45.905 kb on - strand, within Sama_0041at 45.952 kb on + strand, within Sama_0041at 45.953 kb on - strand, within Sama_0041at 45.953 kb on - strand, within Sama_0041at 46.082 kb on + strandat 46.083 kb on - strandat 46.089 kb on + strandat 46.089 kb on + strandat 46.089 kb on + strandat 46.090 kb on - strandat 46.090 kb on - strandat 47.068 kb on - strandat 47.068 kb on - strandat 47.068 kb on - strandat 47.068 kb on - strandat 47.068 kb on - strandat 47.068 kb on - strandat 47.068 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate
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44,799 - +0.4
44,836 + -1.0
44,837 - +2.8
44,837 - -0.9
44,837 - +0.6
44,883 - +0.3
44,889 - -1.3
44,889 - +0.3
45,018 - Sama_0041 0.17 -0.9
45,018 - Sama_0041 0.17 +0.3
45,018 - Sama_0041 0.17 -0.3
45,018 - Sama_0041 0.17 +0.2
45,018 - Sama_0041 0.17 +0.3
45,018 - Sama_0041 0.17 +1.3
45,018 - Sama_0041 0.17 -0.5
45,357 + Sama_0041 0.43 +1.3
45,358 - Sama_0041 0.43 -0.8
45,358 - Sama_0041 0.43 +0.7
45,358 - Sama_0041 0.43 -1.5
45,513 + Sama_0041 0.55 -1.0
45,514 - Sama_0041 0.55 +0.2
45,542 - Sama_0041 0.57 -1.9
45,542 - Sama_0041 0.57 +0.3
45,542 - Sama_0041 0.57 -0.7
45,542 - Sama_0041 0.57 -3.0
45,575 + Sama_0041 0.60 -0.2
45,576 - Sama_0041 0.60 +0.5
45,610 - Sama_0041 0.63 -0.7
45,610 - Sama_0041 0.63 +2.4
45,610 - Sama_0041 0.63 -1.3
45,610 - Sama_0041 0.63 -1.3
45,610 - Sama_0041 0.63 -1.0
45,610 - Sama_0041 0.63 -0.5
45,610 - Sama_0041 0.63 -0.9
45,675 - Sama_0041 0.68 -0.7
45,675 - Sama_0041 0.68 -2.7
45,676 + Sama_0041 0.68 -0.8
45,677 - Sama_0041 0.68 -0.2
45,677 - Sama_0041 0.68 -0.7
45,677 - Sama_0041 0.68 -2.0
45,725 + Sama_0041 0.72 -1.4
45,726 - Sama_0041 0.72 +0.3
45,726 - Sama_0041 0.72 -0.3
45,726 - Sama_0041 0.72 -2.0
45,726 - Sama_0041 0.72 -0.8
45,753 + Sama_0041 0.74 -0.4
45,753 + Sama_0041 0.74 +0.7
45,753 + Sama_0041 0.74 -2.5
45,753 + Sama_0041 0.74 +0.1
45,832 + Sama_0041 0.80 -2.7
45,832 + Sama_0041 0.80 -0.7
45,832 + Sama_0041 0.80 -1.0
45,832 + Sama_0041 0.80 +1.3
45,832 + Sama_0041 0.80 +0.8
45,833 - Sama_0041 0.80 +1.3
45,833 - Sama_0041 0.80 -0.1
45,833 - Sama_0041 0.80 -2.0
45,841 + Sama_0041 0.81 -1.5
45,841 + Sama_0041 0.81 +0.6
45,841 + Sama_0041 0.81 -1.7
45,855 + Sama_0041 0.82 -1.3
45,856 - Sama_0041 0.82 -0.4
45,856 - Sama_0041 0.82 -1.3
45,856 - Sama_0041 0.82 -1.4
45,856 - Sama_0041 0.82 -3.5
45,902 + Sama_0041 0.85 +0.9
45,902 + Sama_0041 0.85 +1.0
45,902 + Sama_0041 0.85 +0.4
45,902 + Sama_0041 0.85 -1.5
45,902 + Sama_0041 0.85 +0.3
45,902 + Sama_0041 0.85 +0.2
45,902 + Sama_0041 0.85 -1.9
45,903 - Sama_0041 0.86 +0.3
45,903 - Sama_0041 0.86 -1.7
45,903 - Sama_0041 0.86 -1.7
45,903 - Sama_0041 0.86 -1.3
45,903 - Sama_0041 0.86 +0.7
45,903 - Sama_0041 0.86 -1.3
45,903 - Sama_0041 0.86 -1.3
45,903 - Sama_0041 0.86 +0.7
45,904 + Sama_0041 0.86 -0.3
45,904 + Sama_0041 0.86 -1.3
45,904 + Sama_0041 0.86 +0.2
45,904 + Sama_0041 0.86 -1.9
45,904 + Sama_0041 0.86 -1.1
45,904 + Sama_0041 0.86 -2.9
45,904 + Sama_0041 0.86 -1.3
45,904 + Sama_0041 0.86 -0.3
45,905 - Sama_0041 0.86 -2.5
45,905 - Sama_0041 0.86 -2.0
45,905 - Sama_0041 0.86 -1.2
45,905 - Sama_0041 0.86 -2.3
45,905 - Sama_0041 0.86 -0.2
45,905 - Sama_0041 0.86 -0.9
45,905 - Sama_0041 0.86 -2.0
45,952 + Sama_0041 0.89 +0.1
45,953 - Sama_0041 0.89 -1.0
45,953 - Sama_0041 0.89 -2.8
46,082 + +0.3
46,083 - -0.3
46,089 + -1.3
46,089 + +1.2
46,089 + +0.1
46,090 - -0.2
46,090 - -0.1
47,068 - -0.7
47,068 - -1.3
47,068 - -1.3
47,068 - -0.7
47,068 - -0.3
47,068 - -1.0
47,068 - -0.1

Or see this region's nucleotide sequence