Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4335

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4333 and Psest_4334 are separated by 17 nucleotidesPsest_4334 and Psest_4335 are separated by 21 nucleotidesPsest_4335 and Psest_4336 are separated by 83 nucleotides Psest_4333: Psest_4333 - Uncharacterized protein required for cytochrome oxidase assembly, at 4,532,025 to 4,533,080 _4333 Psest_4334: Psest_4334 - protoheme IX farnesyltransferase, at 4,533,098 to 4,533,997 _4334 Psest_4335: Psest_4335 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 4,534,019 to 4,534,654 _4335 Psest_4336: Psest_4336 - Uncharacterized iron-regulated membrane protein, at 4,534,738 to 4,535,925 _4336 Position (kb) 4534 4535Strain fitness (log2 ratio) -2 -1 0 1at 4533.108 kb on + strandat 4533.108 kb on + strandat 4533.108 kb on + strandat 4533.109 kb on - strandat 4533.109 kb on - strandat 4533.147 kb on - strandat 4533.178 kb on - strandat 4533.178 kb on - strandat 4533.178 kb on - strandat 4533.178 kb on - strandat 4533.201 kb on + strand, within Psest_4334at 4533.201 kb on + strand, within Psest_4334at 4533.500 kb on + strand, within Psest_4334at 4533.500 kb on + strand, within Psest_4334at 4533.500 kb on + strand, within Psest_4334at 4533.500 kb on + strand, within Psest_4334at 4533.500 kb on + strand, within Psest_4334at 4533.500 kb on + strand, within Psest_4334at 4533.500 kb on + strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.501 kb on - strand, within Psest_4334at 4533.692 kb on + strand, within Psest_4334at 4533.693 kb on - strand, within Psest_4334at 4533.708 kb on + strand, within Psest_4334at 4533.708 kb on + strand, within Psest_4334at 4533.709 kb on - strand, within Psest_4334at 4533.709 kb on - strand, within Psest_4334at 4533.740 kb on + strand, within Psest_4334at 4533.740 kb on + strand, within Psest_4334at 4533.740 kb on + strand, within Psest_4334at 4533.741 kb on - strand, within Psest_4334at 4533.765 kb on - strand, within Psest_4334at 4533.765 kb on - strandat 4533.827 kb on + strand, within Psest_4334at 4533.828 kb on - strand, within Psest_4334at 4533.828 kb on - strand, within Psest_4334at 4533.828 kb on - strand, within Psest_4334at 4533.867 kb on - strand, within Psest_4334at 4533.939 kb on - strandat 4533.939 kb on - strandat 4533.977 kb on + strandat 4533.978 kb on - strandat 4533.978 kb on - strandat 4534.008 kb on + strandat 4534.213 kb on - strand, within Psest_4335at 4534.407 kb on - strand, within Psest_4335at 4534.407 kb on - strand, within Psest_4335at 4534.415 kb on + strand, within Psest_4335at 4534.524 kb on - strand, within Psest_4335at 4534.524 kb on - strand, within Psest_4335at 4534.660 kb on - strandat 4534.820 kb on - strandat 4535.048 kb on + strand, within Psest_4336at 4535.048 kb on + strand, within Psest_4336at 4535.048 kb on + strand, within Psest_4336at 4535.048 kb on + strand, within Psest_4336at 4535.049 kb on - strand, within Psest_4336at 4535.049 kb on - strand, within Psest_4336at 4535.057 kb on + strand, within Psest_4336at 4535.069 kb on + strand, within Psest_4336at 4535.069 kb on + strand, within Psest_4336at 4535.069 kb on + strand, within Psest_4336at 4535.069 kb on + strand, within Psest_4336at 4535.069 kb on + strand, within Psest_4336at 4535.069 kb on + strand, within Psest_4336at 4535.069 kb on + strand, within Psest_4336at 4535.069 kb on + strand, within Psest_4336at 4535.069 kb on + strand, within Psest_4336at 4535.070 kb on - strand, within Psest_4336at 4535.070 kb on - strand, within Psest_4336at 4535.072 kb on + strand, within Psest_4336at 4535.072 kb on + strand, within Psest_4336at 4535.072 kb on + strand, within Psest_4336at 4535.073 kb on - strand, within Psest_4336at 4535.073 kb on - strand, within Psest_4336at 4535.073 kb on - strand, within Psest_4336at 4535.073 kb on - strand, within Psest_4336at 4535.132 kb on + strand, within Psest_4336at 4535.150 kb on + strand, within Psest_4336at 4535.305 kb on + strand, within Psest_4336at 4535.458 kb on - strand, within Psest_4336at 4535.501 kb on + strand, within Psest_4336at 4535.502 kb on - strand, within Psest_4336at 4535.601 kb on - strand, within Psest_4336

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,533,108 + -2.4
4,533,108 + +0.1
4,533,108 + -1.0
4,533,109 - +0.7
4,533,109 - -0.4
4,533,147 - -0.6
4,533,178 - +0.6
4,533,178 - -0.1
4,533,178 - +0.2
4,533,178 - +0.3
4,533,201 + Psest_4334 0.11 -1.2
4,533,201 + Psest_4334 0.11 -0.4
4,533,500 + Psest_4334 0.45 -0.4
4,533,500 + Psest_4334 0.45 +0.9
4,533,500 + Psest_4334 0.45 +0.6
4,533,500 + Psest_4334 0.45 -0.3
4,533,500 + Psest_4334 0.45 -0.1
4,533,500 + Psest_4334 0.45 +0.7
4,533,500 + Psest_4334 0.45 -0.5
4,533,501 - Psest_4334 0.45 -0.7
4,533,501 - Psest_4334 0.45 +0.3
4,533,501 - Psest_4334 0.45 -0.5
4,533,501 - Psest_4334 0.45 -0.8
4,533,501 - Psest_4334 0.45 +0.1
4,533,501 - Psest_4334 0.45 +0.3
4,533,501 - Psest_4334 0.45 -0.1
4,533,501 - Psest_4334 0.45 +1.2
4,533,501 - Psest_4334 0.45 -0.1
4,533,501 - Psest_4334 0.45 +0.5
4,533,501 - Psest_4334 0.45 +0.2
4,533,501 - Psest_4334 0.45 +0.1
4,533,501 - Psest_4334 0.45 -0.1
4,533,501 - Psest_4334 0.45 +0.0
4,533,501 - Psest_4334 0.45 +1.3
4,533,501 - Psest_4334 0.45 +0.3
4,533,692 + Psest_4334 0.66 +0.8
4,533,693 - Psest_4334 0.66 -0.0
4,533,708 + Psest_4334 0.68 -1.4
4,533,708 + Psest_4334 0.68 +0.3
4,533,709 - Psest_4334 0.68 +0.3
4,533,709 - Psest_4334 0.68 +0.5
4,533,740 + Psest_4334 0.71 -0.8
4,533,740 + Psest_4334 0.71 +0.7
4,533,740 + Psest_4334 0.71 -0.1
4,533,741 - Psest_4334 0.71 -0.5
4,533,765 - Psest_4334 0.74 +0.1
4,533,765 - +1.3
4,533,827 + Psest_4334 0.81 -0.6
4,533,828 - Psest_4334 0.81 -0.1
4,533,828 - Psest_4334 0.81 +1.0
4,533,828 - Psest_4334 0.81 -0.8
4,533,867 - Psest_4334 0.85 +0.6
4,533,939 - +0.8
4,533,939 - +1.0
4,533,977 + +0.7
4,533,978 - +0.8
4,533,978 - +0.2
4,534,008 + +0.4
4,534,213 - Psest_4335 0.31 +0.7
4,534,407 - Psest_4335 0.61 +1.1
4,534,407 - Psest_4335 0.61 +1.2
4,534,415 + Psest_4335 0.62 +0.1
4,534,524 - Psest_4335 0.79 +0.2
4,534,524 - Psest_4335 0.79 +0.5
4,534,660 - -0.3
4,534,820 - -0.6
4,535,048 + Psest_4336 0.26 +0.1
4,535,048 + Psest_4336 0.26 -0.4
4,535,048 + Psest_4336 0.26 -0.2
4,535,048 + Psest_4336 0.26 -1.7
4,535,049 - Psest_4336 0.26 -1.7
4,535,049 - Psest_4336 0.26 -0.9
4,535,057 + Psest_4336 0.27 -0.4
4,535,069 + Psest_4336 0.28 +0.3
4,535,069 + Psest_4336 0.28 +0.2
4,535,069 + Psest_4336 0.28 +0.1
4,535,069 + Psest_4336 0.28 -0.4
4,535,069 + Psest_4336 0.28 +0.8
4,535,069 + Psest_4336 0.28 -0.2
4,535,069 + Psest_4336 0.28 -0.1
4,535,069 + Psest_4336 0.28 +0.8
4,535,069 + Psest_4336 0.28 +0.3
4,535,070 - Psest_4336 0.28 +0.1
4,535,070 - Psest_4336 0.28 -0.1
4,535,072 + Psest_4336 0.28 -0.4
4,535,072 + Psest_4336 0.28 +0.8
4,535,072 + Psest_4336 0.28 +0.3
4,535,073 - Psest_4336 0.28 -0.1
4,535,073 - Psest_4336 0.28 +0.3
4,535,073 - Psest_4336 0.28 +0.8
4,535,073 - Psest_4336 0.28 +0.3
4,535,132 + Psest_4336 0.33 +0.9
4,535,150 + Psest_4336 0.35 +0.2
4,535,305 + Psest_4336 0.48 -0.1
4,535,458 - Psest_4336 0.61 -0.1
4,535,501 + Psest_4336 0.64 +0.6
4,535,502 - Psest_4336 0.64 +0.6
4,535,601 - Psest_4336 0.73 +0.0

Or see this region's nucleotide sequence