Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4142

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4141 and Psest_4142 are separated by 11 nucleotidesPsest_4142 and Psest_4143 are separated by 16 nucleotidesPsest_4143 and Psest_4144 are separated by 37 nucleotides Psest_4141: Psest_4141 - 3-carboxymuconate cyclase, at 4,324,135 to 4,325,328 _4141 Psest_4142: Psest_4142 - hypothetical protein, at 4,325,340 to 4,326,377 _4142 Psest_4143: Psest_4143 - flagellar hook-associated protein 3, at 4,326,394 to 4,327,302 _4143 Psest_4144: Psest_4144 - flagellar hook-associated protein FlgK, at 4,327,340 to 4,328,719 _4144 Position (kb) 4325 4326 4327Strain fitness (log2 ratio) -2 -1 0 1 2at 4324.402 kb on + strand, within Psest_4141at 4324.473 kb on + strand, within Psest_4141at 4324.473 kb on + strand, within Psest_4141at 4324.474 kb on - strand, within Psest_4141at 4324.474 kb on - strand, within Psest_4141at 4324.573 kb on + strand, within Psest_4141at 4324.573 kb on + strand, within Psest_4141at 4324.573 kb on + strand, within Psest_4141at 4324.574 kb on - strand, within Psest_4141at 4324.574 kb on - strand, within Psest_4141at 4324.903 kb on + strand, within Psest_4141at 4324.903 kb on + strand, within Psest_4141at 4324.945 kb on + strand, within Psest_4141at 4324.946 kb on - strand, within Psest_4141at 4324.946 kb on - strand, within Psest_4141at 4325.031 kb on + strand, within Psest_4141at 4325.031 kb on + strand, within Psest_4141at 4325.031 kb on + strand, within Psest_4141at 4325.031 kb on + strand, within Psest_4141at 4325.032 kb on - strand, within Psest_4141at 4325.032 kb on - strand, within Psest_4141at 4325.032 kb on - strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.536 kb on - strand, within Psest_4142at 4326.078 kb on - strand, within Psest_4142at 4326.173 kb on - strand, within Psest_4142at 4326.396 kb on - strandat 4326.434 kb on + strandat 4326.434 kb on + strandat 4326.434 kb on + strandat 4326.434 kb on + strandat 4326.434 kb on + strandat 4326.434 kb on + strandat 4326.434 kb on + strandat 4326.435 kb on - strandat 4326.435 kb on - strandat 4326.435 kb on - strandat 4326.435 kb on - strandat 4326.435 kb on - strandat 4326.435 kb on - strandat 4326.467 kb on + strandat 4326.467 kb on + strandat 4326.468 kb on - strandat 4326.468 kb on - strandat 4326.497 kb on + strand, within Psest_4143at 4326.497 kb on + strand, within Psest_4143at 4326.497 kb on + strand, within Psest_4143at 4326.497 kb on + strand, within Psest_4143at 4326.497 kb on + strand, within Psest_4143at 4326.498 kb on - strand, within Psest_4143at 4326.845 kb on + strand, within Psest_4143at 4326.845 kb on + strand, within Psest_4143at 4326.845 kb on + strand, within Psest_4143at 4326.845 kb on + strand, within Psest_4143at 4326.845 kb on + strand, within Psest_4143at 4326.845 kb on + strand, within Psest_4143at 4326.845 kb on + strand, within Psest_4143at 4326.845 kb on + strand, within Psest_4143at 4326.845 kb on + strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.846 kb on - strand, within Psest_4143at 4326.849 kb on + strand, within Psest_4143at 4326.849 kb on + strand, within Psest_4143at 4326.849 kb on + strand, within Psest_4143at 4326.849 kb on + strand, within Psest_4143at 4326.849 kb on + strand, within Psest_4143at 4326.850 kb on - strand, within Psest_4143at 4326.850 kb on - strand, within Psest_4143at 4327.105 kb on + strand, within Psest_4143at 4327.105 kb on + strand, within Psest_4143at 4327.105 kb on + strand, within Psest_4143at 4327.105 kb on + strand, within Psest_4143at 4327.105 kb on + strand, within Psest_4143at 4327.106 kb on - strand, within Psest_4143at 4327.106 kb on - strand, within Psest_4143at 4327.106 kb on - strand, within Psest_4143at 4327.106 kb on - strand, within Psest_4143at 4327.106 kb on - strand, within Psest_4143at 4327.106 kb on - strand, within Psest_4143at 4327.106 kb on - strand, within Psest_4143

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,324,402 + Psest_4141 0.22 +0.1
4,324,473 + Psest_4141 0.28 +0.0
4,324,473 + Psest_4141 0.28 +1.4
4,324,474 - Psest_4141 0.28 +0.4
4,324,474 - Psest_4141 0.28 +0.0
4,324,573 + Psest_4141 0.37 +0.7
4,324,573 + Psest_4141 0.37 +1.1
4,324,573 + Psest_4141 0.37 +0.8
4,324,574 - Psest_4141 0.37 -0.7
4,324,574 - Psest_4141 0.37 -0.3
4,324,903 + Psest_4141 0.64 +0.0
4,324,903 + Psest_4141 0.64 -0.1
4,324,945 + Psest_4141 0.68 +0.7
4,324,946 - Psest_4141 0.68 +2.2
4,324,946 - Psest_4141 0.68 -0.5
4,325,031 + Psest_4141 0.75 -0.6
4,325,031 + Psest_4141 0.75 -1.6
4,325,031 + Psest_4141 0.75 -0.0
4,325,031 + Psest_4141 0.75 -0.2
4,325,032 - Psest_4141 0.75 +0.4
4,325,032 - Psest_4141 0.75 +0.0
4,325,032 - Psest_4141 0.75 +1.0
4,325,056 + Psest_4141 0.77 +0.8
4,325,056 + Psest_4141 0.77 -0.6
4,325,056 + Psest_4141 0.77 +1.8
4,325,056 + Psest_4141 0.77 +1.2
4,325,056 + Psest_4141 0.77 +0.1
4,325,056 + Psest_4141 0.77 -0.5
4,325,056 + Psest_4141 0.77 -2.0
4,325,056 + Psest_4141 0.77 +1.4
4,325,057 - Psest_4141 0.77 -0.1
4,325,057 - Psest_4141 0.77 -0.1
4,325,057 - Psest_4141 0.77 +1.1
4,325,057 - Psest_4141 0.77 -1.2
4,325,057 - Psest_4141 0.77 +1.8
4,325,057 - Psest_4141 0.77 +0.2
4,325,057 - Psest_4141 0.77 +0.1
4,325,057 - Psest_4141 0.77 +0.8
4,325,057 - Psest_4141 0.77 +0.2
4,325,057 - Psest_4141 0.77 +1.7
4,325,536 - Psest_4142 0.19 +0.9
4,326,078 - Psest_4142 0.71 -1.0
4,326,173 - Psest_4142 0.80 +1.1
4,326,396 - +0.4
4,326,434 + +0.5
4,326,434 + +0.8
4,326,434 + -1.3
4,326,434 + -0.6
4,326,434 + +0.4
4,326,434 + -1.0
4,326,434 + -0.0
4,326,435 - -0.6
4,326,435 - -0.5
4,326,435 - +0.2
4,326,435 - +1.1
4,326,435 - +0.2
4,326,435 - -0.6
4,326,467 + +1.4
4,326,467 + -1.6
4,326,468 - +0.9
4,326,468 - +0.2
4,326,497 + Psest_4143 0.11 -0.6
4,326,497 + Psest_4143 0.11 +0.1
4,326,497 + Psest_4143 0.11 -0.5
4,326,497 + Psest_4143 0.11 +0.5
4,326,497 + Psest_4143 0.11 +0.8
4,326,498 - Psest_4143 0.11 +0.9
4,326,845 + Psest_4143 0.50 +1.4
4,326,845 + Psest_4143 0.50 +0.1
4,326,845 + Psest_4143 0.50 -0.0
4,326,845 + Psest_4143 0.50 +0.4
4,326,845 + Psest_4143 0.50 +0.4
4,326,845 + Psest_4143 0.50 +2.7
4,326,845 + Psest_4143 0.50 +1.9
4,326,845 + Psest_4143 0.50 +0.4
4,326,845 + Psest_4143 0.50 +0.9
4,326,846 - Psest_4143 0.50 +0.7
4,326,846 - Psest_4143 0.50 -1.6
4,326,846 - Psest_4143 0.50 -1.0
4,326,846 - Psest_4143 0.50 -0.5
4,326,846 - Psest_4143 0.50 +1.9
4,326,846 - Psest_4143 0.50 -0.1
4,326,846 - Psest_4143 0.50 +0.3
4,326,846 - Psest_4143 0.50 +1.8
4,326,846 - Psest_4143 0.50 +0.2
4,326,846 - Psest_4143 0.50 +1.1
4,326,846 - Psest_4143 0.50 +0.4
4,326,849 + Psest_4143 0.50 +2.4
4,326,849 + Psest_4143 0.50 +0.2
4,326,849 + Psest_4143 0.50 +0.9
4,326,849 + Psest_4143 0.50 -0.3
4,326,849 + Psest_4143 0.50 -0.1
4,326,850 - Psest_4143 0.50 +1.4
4,326,850 - Psest_4143 0.50 -0.5
4,327,105 + Psest_4143 0.78 -0.5
4,327,105 + Psest_4143 0.78 -0.6
4,327,105 + Psest_4143 0.78 +0.0
4,327,105 + Psest_4143 0.78 -0.2
4,327,105 + Psest_4143 0.78 +0.4
4,327,106 - Psest_4143 0.78 +0.8
4,327,106 - Psest_4143 0.78 -0.5
4,327,106 - Psest_4143 0.78 -0.0
4,327,106 - Psest_4143 0.78 +0.4
4,327,106 - Psest_4143 0.78 +1.4
4,327,106 - Psest_4143 0.78 +2.2
4,327,106 - Psest_4143 0.78 -1.1

Or see this region's nucleotide sequence