Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4078

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_4077 and Psest_4078 are separated by 100 nucleotidesPsest_4078 and Psest_4079 are separated by 124 nucleotidesPsest_4079 and Psest_4080 are separated by 16 nucleotides Psest_4077: Psest_4077 - amino acid carrier protein, at 4,252,578 to 4,253,999 _4077 Psest_4078: Psest_4078 - L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D, at 4,254,100 to 4,255,083 _4078 Psest_4079: Psest_4079 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 4,255,208 to 4,256,017 _4079 Psest_4080: Psest_4080 - Carbonic anhydrase, at 4,256,034 to 4,256,732 _4080 Position (kb) 4254 4255 4256Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4253.212 kb on - strand, within Psest_4077at 4253.520 kb on + strand, within Psest_4077at 4253.521 kb on - strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.647 kb on - strand, within Psest_4077at 4253.647 kb on - strand, within Psest_4077at 4253.647 kb on - strand, within Psest_4077at 4253.647 kb on - strand, within Psest_4077at 4253.652 kb on + strand, within Psest_4077at 4253.652 kb on + strand, within Psest_4077at 4253.652 kb on + strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.655 kb on + strand, within Psest_4077at 4253.655 kb on + strand, within Psest_4077at 4253.656 kb on - strand, within Psest_4077at 4253.656 kb on - strand, within Psest_4077at 4253.656 kb on - strand, within Psest_4077at 4253.656 kb on - strand, within Psest_4077at 4253.712 kb on + strand, within Psest_4077at 4253.712 kb on + strand, within Psest_4077at 4253.713 kb on - strand, within Psest_4077at 4253.713 kb on - strand, within Psest_4077at 4253.868 kb on + strandat 4253.869 kb on - strandat 4254.040 kb on - strandat 4254.093 kb on + strandat 4254.093 kb on + strandat 4254.134 kb on - strandat 4254.394 kb on + strand, within Psest_4078at 4254.794 kb on - strand, within Psest_4078at 4254.918 kb on - strand, within Psest_4078at 4254.919 kb on + strand, within Psest_4078at 4254.920 kb on - strand, within Psest_4078at 4254.920 kb on - strand, within Psest_4078at 4255.170 kb on + strandat 4255.171 kb on - strandat 4255.181 kb on + strandat 4255.182 kb on - strandat 4255.182 kb on - strandat 4255.260 kb on + strandat 4255.260 kb on + strandat 4255.261 kb on - strandat 4255.261 kb on - strandat 4255.261 kb on - strandat 4255.261 kb on - strandat 4255.292 kb on + strand, within Psest_4079at 4255.292 kb on + strand, within Psest_4079at 4255.292 kb on + strand, within Psest_4079at 4255.293 kb on - strand, within Psest_4079at 4255.306 kb on - strand, within Psest_4079at 4255.405 kb on + strand, within Psest_4079at 4255.430 kb on + strand, within Psest_4079at 4255.430 kb on + strand, within Psest_4079at 4255.431 kb on - strand, within Psest_4079at 4255.431 kb on - strand, within Psest_4079at 4255.466 kb on + strand, within Psest_4079at 4255.467 kb on - strand, within Psest_4079at 4255.467 kb on - strand, within Psest_4079at 4255.859 kb on + strand, within Psest_4079at 4255.879 kb on + strand, within Psest_4079at 4255.879 kb on + strand, within Psest_4079at 4255.880 kb on - strand, within Psest_4079at 4255.880 kb on - strand, within Psest_4079at 4255.973 kb on + strandat 4255.973 kb on + strandat 4255.973 kb on + strandat 4256.047 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
4,253,212 - Psest_4077 0.45 -0.2
4,253,520 + Psest_4077 0.66 -0.6
4,253,521 - Psest_4077 0.66 +0.6
4,253,646 + Psest_4077 0.75 -0.7
4,253,646 + Psest_4077 0.75 -0.4
4,253,646 + Psest_4077 0.75 -0.1
4,253,646 + Psest_4077 0.75 -0.6
4,253,646 + Psest_4077 0.75 -0.3
4,253,646 + Psest_4077 0.75 -1.8
4,253,646 + Psest_4077 0.75 -0.8
4,253,646 + Psest_4077 0.75 -0.2
4,253,647 - Psest_4077 0.75 -1.2
4,253,647 - Psest_4077 0.75 -1.5
4,253,647 - Psest_4077 0.75 -0.2
4,253,647 - Psest_4077 0.75 -0.5
4,253,652 + Psest_4077 0.76 +0.1
4,253,652 + Psest_4077 0.76 -0.3
4,253,652 + Psest_4077 0.76 +0.1
4,253,653 - Psest_4077 0.76 -0.9
4,253,653 - Psest_4077 0.76 -0.9
4,253,653 - Psest_4077 0.76 -0.9
4,253,653 - Psest_4077 0.76 +1.0
4,253,653 - Psest_4077 0.76 +0.9
4,253,653 - Psest_4077 0.76 +1.5
4,253,653 - Psest_4077 0.76 -0.8
4,253,653 - Psest_4077 0.76 -0.7
4,253,653 - Psest_4077 0.76 +0.7
4,253,655 + Psest_4077 0.76 -0.1
4,253,655 + Psest_4077 0.76 -0.1
4,253,656 - Psest_4077 0.76 -1.3
4,253,656 - Psest_4077 0.76 -0.1
4,253,656 - Psest_4077 0.76 +0.3
4,253,656 - Psest_4077 0.76 -1.0
4,253,712 + Psest_4077 0.80 -1.5
4,253,712 + Psest_4077 0.80 +0.2
4,253,713 - Psest_4077 0.80 +1.0
4,253,713 - Psest_4077 0.80 -1.0
4,253,868 + -0.4
4,253,869 - +0.9
4,254,040 - +0.2
4,254,093 + +0.2
4,254,093 + +0.3
4,254,134 - +4.3
4,254,394 + Psest_4078 0.30 +4.2
4,254,794 - Psest_4078 0.71 +4.6
4,254,918 - Psest_4078 0.83 +2.3
4,254,919 + Psest_4078 0.83 +4.1
4,254,920 - Psest_4078 0.83 +3.5
4,254,920 - Psest_4078 0.83 +2.6
4,255,170 + +0.0
4,255,171 - +0.3
4,255,181 + +0.7
4,255,182 - +0.5
4,255,182 - -0.4
4,255,260 + +0.4
4,255,260 + +0.3
4,255,261 - +0.7
4,255,261 - +0.4
4,255,261 - -1.7
4,255,261 - -0.5
4,255,292 + Psest_4079 0.10 -1.6
4,255,292 + Psest_4079 0.10 +0.6
4,255,292 + Psest_4079 0.10 -0.2
4,255,293 - Psest_4079 0.10 -0.5
4,255,306 - Psest_4079 0.12 +0.0
4,255,405 + Psest_4079 0.24 +0.3
4,255,430 + Psest_4079 0.27 +0.6
4,255,430 + Psest_4079 0.27 -0.2
4,255,431 - Psest_4079 0.28 +0.4
4,255,431 - Psest_4079 0.28 +0.9
4,255,466 + Psest_4079 0.32 +0.4
4,255,467 - Psest_4079 0.32 +1.0
4,255,467 - Psest_4079 0.32 +0.8
4,255,859 + Psest_4079 0.80 -0.4
4,255,879 + Psest_4079 0.83 +0.6
4,255,879 + Psest_4079 0.83 +1.0
4,255,880 - Psest_4079 0.83 -0.6
4,255,880 - Psest_4079 0.83 -0.1
4,255,973 + -0.3
4,255,973 + -0.2
4,255,973 + -0.3
4,256,047 + +0.1

Or see this region's nucleotide sequence