Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4002 and Psest_4003 are separated by 38 nucleotides Psest_4003 and Psest_4004 are separated by 113 nucleotides Psest_4004 and Psest_4005 are separated by 105 nucleotides
Psest_4002: Psest_4002 - Phosphate/sulphate permeases, at 4,174,233 to 4,175,498
_4002
Psest_4003: Psest_4003 - TIGR00153 family protein, at 4,175,537 to 4,176,214
_4003
Psest_4004: Psest_4004 - Uncharacterized conserved protein, at 4,176,328 to 4,177,692
_4004
Psest_4005: Psest_4005 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 4,177,798 to 4,179,582
_4005
Position (kb) 4176
4177
4178 Strain fitness (log2 ratio) -1
0
1
2 at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.620 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4176.152 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.250 kb on + strand at 4176.250 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.310 kb on - strand at 4176.353 kb on + strand at 4176.353 kb on + strand at 4176.451 kb on + strand at 4176.451 kb on + strand at 4176.452 kb on - strand at 4176.452 kb on - strand at 4176.454 kb on + strand at 4176.455 kb on - strand at 4176.455 kb on - strand at 4176.592 kb on + strand, within Psest_4004 at 4176.592 kb on + strand, within Psest_4004 at 4176.593 kb on - strand, within Psest_4004 at 4176.952 kb on + strand, within Psest_4004 at 4176.953 kb on - strand, within Psest_4004 at 4177.063 kb on + strand, within Psest_4004 at 4177.691 kb on - strand at 4177.691 kb on - strand at 4177.691 kb on - strand at 4177.754 kb on - strand at 4178.053 kb on + strand, within Psest_4005 at 4178.110 kb on + strand, within Psest_4005 at 4178.111 kb on - strand, within Psest_4005 at 4178.290 kb on + strand, within Psest_4005 at 4178.291 kb on - strand, within Psest_4005 at 4178.543 kb on - strand, within Psest_4005
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 4,175,506 - +1.6 4,175,506 - -0.1 4,175,506 - +0.4 4,175,506 - +2.1 4,175,506 - +1.1 4,175,620 - Psest_4003 0.12 -1.2 4,175,845 - Psest_4003 0.45 -0.0 4,175,845 - Psest_4003 0.45 +0.7 4,175,845 - Psest_4003 0.45 +0.3 4,175,845 - Psest_4003 0.45 +0.7 4,175,845 - Psest_4003 0.45 +1.3 4,175,845 - Psest_4003 0.45 +0.8 4,175,943 - Psest_4003 0.60 +0.8 4,175,943 - Psest_4003 0.60 -0.9 4,175,943 - Psest_4003 0.60 +0.6 4,175,943 - Psest_4003 0.60 -0.7 4,175,943 - Psest_4003 0.60 +0.9 4,176,152 - +0.9 4,176,249 - +1.3 4,176,249 - +0.2 4,176,249 - +0.8 4,176,249 - +0.8 4,176,249 - +1.3 4,176,249 - -0.2 4,176,249 - -0.1 4,176,249 - -0.3 4,176,249 - -0.2 4,176,250 + +0.9 4,176,250 + +0.5 4,176,309 + +0.8 4,176,309 + +1.1 4,176,309 + +0.3 4,176,309 + +1.3 4,176,309 + +1.2 4,176,309 + +1.0 4,176,309 + +0.5 4,176,310 - +0.1 4,176,353 + +2.3 4,176,353 + +0.0 4,176,451 + +0.2 4,176,451 + +1.9 4,176,452 - +0.6 4,176,452 - +0.3 4,176,454 + -1.4 4,176,455 - +1.3 4,176,455 - -0.4 4,176,592 + Psest_4004 0.19 +0.8 4,176,592 + Psest_4004 0.19 +1.8 4,176,593 - Psest_4004 0.19 -0.7 4,176,952 + Psest_4004 0.46 +0.4 4,176,953 - Psest_4004 0.46 +0.9 4,177,063 + Psest_4004 0.54 +0.8 4,177,691 - +0.6 4,177,691 - +0.7 4,177,691 - +1.2 4,177,754 - -0.6 4,178,053 + Psest_4005 0.14 +0.9 4,178,110 + Psest_4005 0.17 -0.2 4,178,111 - Psest_4005 0.18 +0.3 4,178,290 + Psest_4005 0.28 -0.5 4,178,291 - Psest_4005 0.28 +0.1 4,178,543 - Psest_4005 0.42 -0.1
Or see this region's nucleotide sequence